Skip to content

2.0.0 - "Kaufbeuren"
Compare
Choose a tag to compare
@apeltzer apeltzer released this 17 Oct 21:21
· 3065 commits to master since this release
2.0.0
897fca7
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

2.0 "Kaufbeuren" - 2018-10-17

Initial release of nf-core/eager featuring:

  • FastQC read quality control
  • (Optional) Read complexity filtering with FastP
  • Read merging and clipping using AdapterRemoval v2
  • Mapping using BWA / BWA Mem or CircularMapper
  • Library Complexity Estimation with Preseq
  • Conversion and Filtering of BAM files using Samtools
  • Damage assessment via DamageProfiler, additional filtering using PMDTools
  • Duplication removal via DeDup
  • BAM Clipping with BamUtil for UDGhalf protocols
  • QualiMap BAM quality control analysis

Furthermore, this already creates an interactive report using MultiQC, which will be upgraded in V2.1 "Ulm" to contain more aDNA specific metrics.

Assets 2
Loading