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[2.3.4] - Aalen (Patch) - 2021-05-05
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@jfy133 jfy133 released this 05 May 11:23
· 515 commits to master since this release
2.3.4
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Learn about vigilant mode.

Added

  • #729 Added Bowtie2 flag --maxins for PE mapping modern DNA mapping contexts

Fixed

  • Corrected explanation of the "--min_adap_overlap" parameter for AdapterRemoval in the docs
  • #725 bwa_index doc update
  • Re-adds gzip piping to AdapterRemovalFixPrefix to speed up process after reports of being very slow
  • Updated DamageProfiler citation from bioRxiv to publication

Dependencies

  • Removed pinning of tbb (upstream bug in bioconda fixed)
  • Bumped pigz to 2.6 to fix rare stall bug when compressing data after AdapterRemoval
  • Bumped Bowtie2 to 2.4.2 to fix issues with tbb version

Deprecated

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