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[2.3.5] - Aalen (Patch) - 2021-06-04
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@jfy133 jfy133 released this 04 Jun 06:17
· 445 commits to master since this release
2.3.5
70e3d27
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Learn about vigilant mode.

Added

  • #722 - Adds bwa -o flag for more flexibility in bwa parameters
  • #736 - Add printing of multiqc run report location on successful completion
  • New logo that is more visible when a user is using darkmode on GitHub or nf-core website!

Fixed

  • #723 - Fixes empty fields in TSV resulting in uninformative error
  • Updated template to nf-core/tools 1.14
  • #688 - Clarified the pipeline is not just for humans and microbes, but also plants and animals, and also for modern DNA
  • #751 - Added missing label to mtnucratio
  • General code cleanup and standardisation of parameters with no default setting
  • #750 - Fixed piped commands requesting the same number of CPUs at each command step
  • #757 - Removed confusing 'Data Type' variable from MultiQC workflow summary (not consistent with TSV input)
  • #759 - Fixed malformed software scraping regex that resulted in N/A in MultiQC report
  • #761 - Fixed issues related to instability of samtools filtering related CI tests

Dependencies

Deprecated

Assets 2
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