1.1.4 - British Beans on Toast (Patch) - 2023-11-07

v1.1.4 - [2023-11-07]

Added

Fixed

• #306 Added new parameter annotation_prokka_retaincontigheaders to allow prokka to retain the original contig headers/locus tag. (by @Darcy220606)
• #307 Fixed stability of deepARG tests by using Zenodo copy of database (❤️ to Gustavo Arango and Liqing Zhang for uploading, fix by @jfy133)
• #310 Fixed error when supplying uncompressed input; added "fas" file extension for FASTA files. (by @tavareshugo)
• #311 Merged pipeline template of nf-core/tools version 2.10. (by @jasmezz)

Dependencies

Tool	Previous version	New version
AMRFinderPlus	3.10.42	3.11.18
Bakta	1.7.0	1.8.2
MultiQC	1.14	1.15

Deprecated

• FastQC