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Running in <code>-stub</code> mode fails for BISMARK_SUMMARY

bugSomething isn't workingSomething isn't working

Status: Open.

#527 In nf-core/methylseq;

· bounlu opened on May 9, 2025

Bismark soft clip --local_alignment True keeps L,value,value

bugSomething isn't workingSomething isn't working

Status: Open.

#472 In nf-core/methylseq;

· ioannagare opened on Nov 27, 2024

Add minimap2 as aligner option for Bismark

enhancementNew feature or requestNew feature or request

Status: Open.

#455 In nf-core/methylseq;

· FelixKrueger opened on Nov 12, 2024

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

enhancementNew feature or requestNew feature or request

Status: Open.

#394 In nf-core/methylseq;

· pdemko opened on Apr 1, 2024

Support for NuGEN Ovation RRBS

staleWill eventually be closed due to divergence and compatibility issues.Will eventually be closed due to divergence and compatibility issues.

Status: Open.

#376 In nf-core/methylseq;

· jma1991 opened on Jan 19, 2024

Add <code>rastair</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#374 In nf-core/methylseq;

· bounlu opened on Jan 16, 2024

Mapping samples to multiple reference fasta

dsl2

enhancementNew feature or requestNew feature or request

Status: Open.

#181 In nf-core/methylseq;

· rbpisupati opened on Nov 30, 2020

Complexity curve

questionFurther information is requestedFurther information is requested

staleWill eventually be closed due to divergence and compatibility issues.Will eventually be closed due to divergence and compatibility issues.

Status: Open.

#96 In nf-core/methylseq;

· bazyliszek opened on May 21, 2019

Add SNP calling

enhancementNew feature or requestNew feature or request

Status: Open.

#65 In nf-core/methylseq;

· ewels opened on Jan 30, 2019