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Issues list

fix bismark_hisat test_full run bug Something isn't working
#500 opened Dec 18, 2024 by sateeshperi
Bismark soft clip --local_alignment True keeps L,value,value bug Something isn't working
#472 opened Nov 27, 2024 by ioannagare
Update multiqc output with bwameth metrics enhancement New feature or request
#463 opened Nov 22, 2024 by sateeshperi
Add minimap2 as aligner option for Bismark enhancement New feature or request
#455 opened Nov 12, 2024 by FelixKrueger
AS-XS tag missing enhancement New feature or request
#397 opened May 1, 2024 by AndreiWCansor
--rrbs and --emseq parameter and argument usage enhancement New feature or request
#389 opened Mar 20, 2024 by deep-buddingcoder
Support for NuGEN Ovation RRBS enhancement New feature or request
#376 opened Jan 19, 2024 by jma1991
Add asTair enhancement New feature or request
#374 opened Jan 16, 2024 by bounlu
Add CX report support from bismark_methylation_extractor enhancement New feature or request good first issue Good for newcomers
#372 opened Jan 9, 2024 by Tintest
Add --skip_fastqc option enhancement New feature or request
#327 opened Jun 20, 2023 by bounlu
Complexity curve question Further information is requested
#96 opened May 21, 2019 by bazyliszek
set picard markduplicates MAX_RECORDS_IN_RAM enhancement New feature or request
#94 opened May 21, 2019 by zchatt
Add SNP calling enhancement New feature or request
#65 opened Jan 30, 2019 by ewels
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