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Link in README does not work properly

Status: Open.

#547 In nf-core/methylseq;

· fbnrst opened on Jul 4, 2025

FASTQC added to ch_multiqc_files twice

Status: Open.

#546 In nf-core/methylseq;

· fbnrst opened on Jul 4, 2025

Running in <code>-stub</code> mode fails for BISMARK_SUMMARY

bugSomething isn't workingSomething isn't working

Status: Open.

#527 In nf-core/methylseq;

· bounlu opened on May 9, 2025

Pixel distance in Picard mark duplicates

bugSomething isn't workingSomething isn't working

Status: Open.

#526 In nf-core/methylseq;

· trombitomi opened on May 6, 2025

Help with Sample Sheet Preparation for Methyl-seq (S4 Illumina EM-seq)

enhancementNew feature or requestNew feature or request

Status: Open.

#510 In nf-core/methylseq;

· CHOWDHURY098 opened on Mar 19, 2025

fix <code>bismark_hisat</code> <code>test_full</code> run

bugSomething isn't workingSomething isn't working

Status: Open.

#500 In nf-core/methylseq;

· sateeshperi opened on Dec 18, 2024

add <code>comprehensive</code> param tests

Status: Open.

#498 In nf-core/methylseq;

· sateeshperi opened on Dec 17, 2024

Bismark soft clip --local_alignment True keeps L,value,value

bugSomething isn't workingSomething isn't working

Status: Open.

#472 In nf-core/methylseq;

· ioannagare opened on Nov 27, 2024

Add minimap2 as aligner option for Bismark

enhancementNew feature or requestNew feature or request

Status: Open.

#455 In nf-core/methylseq;

· FelixKrueger opened on Nov 12, 2024

Adding --maxVariantFrac and --minOppositeDepth to MethylDackel (Bwameth option)

enhancementNew feature or requestNew feature or request

Status: Open.

#404 In nf-core/methylseq;

· LucaZanella15 opened on Jun 18, 2024

AS-XS tag missing

enhancementNew feature or requestNew feature or request

Status: Open.

#397 In nf-core/methylseq;

· AndreiWCansor opened on May 1, 2024

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

enhancementNew feature or requestNew feature or request

Status: Open.

#394 In nf-core/methylseq;

· pdemko opened on Apr 1, 2024