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Would it be possible to set set picard markduplicates MAX_RECORDS_IN_RAM? I have noticed that running large .bam files (>200Gb) this step is extremely slow. Some have found that setting this at 250000 records/ Gb is optimal - https://sourceforge.net/p/picard/wiki/Main_Page/
Many thanks
Zac
The text was updated successfully, but these errors were encountered:
Hello,
Thank you again for this great tool.
Would it be possible to set set picard markduplicates
MAX_RECORDS_IN_RAM
? I have noticed that running large.bam
files (>200Gb) this step is extremely slow. Some have found that setting this at 250000 records/ Gb is optimal - https://sourceforge.net/p/picard/wiki/Main_Page/Many thanks
Zac
The text was updated successfully, but these errors were encountered: