bump mirtop

Author: lpantano

modules/nf-core/mirtop/counts/environment.yml

@@ -4,10 +4,11 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::mirtop=0.4.28
-  - bioconda::pybedtools=0.10.0
-  - bioconda::pysam=0.22.1
+  - bioconda::mirtop=0.4.30
   - bioconda::samtools=1.21
+  - bioconda::pysam=0.22.1
+  - bioconda::pybedtools=0.10.0
   - conda-forge::biopython=1.83
   - conda-forge::pandas=2.2.2
   - conda-forge::python=3.11
+

modules/nf-core/mirtop/counts/main.nf

@@ -3,7 +3,7 @@ process MIRTOP_COUNTS {
     label 'process_single'
 
     conda "${moduleDir}/environment.yml"
-    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools_pruned:60b8208f3dbb2910"
+    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools:b9705c2683e775b8"
 
     input:
     tuple val(meta), path(mirtop_gff)

modules/nf-core/mirtop/export/environment.yml

@@ -4,10 +4,10 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::mirtop=0.4.28
-  - bioconda::pybedtools=0.10.0
-  - bioconda::pysam=0.22.1
+  - bioconda::mirtop=0.4.30
   - bioconda::samtools=1.21
+  - bioconda::pysam=0.22.1
+  - bioconda::pybedtools=0.10.0
   - conda-forge::biopython=1.83
   - conda-forge::pandas=2.2.2
   - conda-forge::python=3.11

modules/nf-core/mirtop/export/main.nf

@@ -3,7 +3,7 @@ process MIRTOP_EXPORT {
     label 'process_single'
 
     conda "${moduleDir}/environment.yml"
-    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools_pruned:60b8208f3dbb2910"
+    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools:b9705c2683e775b8"
 
     input:
     tuple val(meta), path(mirtop_gff)

modules/nf-core/mirtop/gff/environment.yml

@@ -4,10 +4,10 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::mirtop=0.4.28
-  - bioconda::pybedtools=0.10.0
-  - bioconda::pysam=0.22.1
+  - bioconda::mirtop=0.4.30
   - bioconda::samtools=1.21
+  - bioconda::pysam=0.22.1
+  - bioconda::pybedtools=0.10.0
   - conda-forge::biopython=1.83
   - conda-forge::pandas=2.2.2
   - conda-forge::python=3.11

modules/nf-core/mirtop/gff/main.nf

@@ -3,7 +3,7 @@ process MIRTOP_GFF {
     label 'process_single'
 
     conda "${moduleDir}/environment.yml"
-    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools_pruned:60b8208f3dbb2910"
+    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools:b9705c2683e775b8"
 
     input:
     tuple val(meta), path(bam, arity:'1..*')

modules/nf-core/mirtop/stats/environment.yml

@@ -4,10 +4,10 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::mirtop=0.4.28
-  - bioconda::pybedtools=0.10.0
-  - bioconda::pysam=0.22.1
+  - bioconda::mirtop=0.4.30
   - bioconda::samtools=1.21
+  - bioconda::pysam=0.22.1
+  - bioconda::pybedtools=0.10.0
   - conda-forge::biopython=1.83
   - conda-forge::pandas=2.2.2
   - conda-forge::python=3.11

modules/nf-core/mirtop/stats/main.nf

@@ -4,7 +4,7 @@ process MIRTOP_STATS {
     label 'process_single'
 
     conda "${moduleDir}/environment.yml"
-    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools_pruned:60b8208f3dbb2910"
+    container "community.wave.seqera.io/library/mirtop_pybedtools_pysam_samtools:b9705c2683e775b8"
 
     input:
     tuple val(meta), path(mirtop_gff)