Overview
- Added PEACH [WiGiTS]
- Added CIDER [WiGiTS]
- Added TEAL [WiGiTS]
- Switched to latest BWA-MEM2 changes via BWA-PLUS (see here)
- Updated Hartwig panel of normal for GRCh38 in SAGE
What's Changed
- Post release bump by @scwatts in #199
- Downgrade nf-schema to 2.2.0 by @scwatts in #200
- Fix integer overflow of fastp --split_by_lines value by @scwatts in #190
- Fix REDUX TSV discovery for non-local files by @scwatts in #201
- Important! Template update for nf-core/tools v3.2.1 by @nf-core-bot in #196
- Implement PEACH subworkflow by @scwatts in #187
- Fix output prepared reference data directory names by @scwatts in #205
- Prevent ORANGE running with incompatible CUPPA inputs by @scwatts in #206
- Implement TEAL subworkflow by @scwatts, @luan-n-nguyen in #189
- Implement CIDER subworkflow by @scwatts in #188
- Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in #204
- Apply minor fixes and updates by @scwatts, @luan-n-nguyen in #207
- Switch to bwa-plus from bwa-mem2 by @luan-n-nguyen, @scwatts in #210
- Fix PAVE container directive by @scwatts in #212
- Configure RunsOn runner to use large disk by @scwatts in #213
- Prepare release 2.1.0 by @scwatts in #214
- Fix targeted mode parameters by @luan-n-nguyen in #217
- Reviewer recommendations and other adjustments by @scwatts in #218
- Add metromap-style diagram for pipeline overview by @scwatts in #219
- Release 2.1.0 by @scwatts in #215
Full Changelog: 2.0.0...2.1.0