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MULTIQC report per sample

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#82 In nf-core/phaseimpute;

· by atrigila was closed on Jun 17, 2024

Update all nf-core tools

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#89 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jul 12, 2024

Future improvement

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#90 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jul 10, 2024

Include stitch imputation tool

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#32 In nf-core/phaseimpute;

· by atrigila was closed on May 6, 2024

Correctly separate panel preparation and imputation

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#29 In nf-core/phaseimpute;

· by LouisLeNezet was closed on May 13, 2024

change panel.csv

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#114 In nf-core/phaseimpute;

· by atrigila was closed on Oct 10, 2024

Check adherence to guidelines for pipeline release

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#121 In nf-core/phaseimpute;

· by atrigila was closed on Feb 7, 2025

Add tests with dog data

Status: Closed (completed).

#120 In nf-core/phaseimpute;

· by atrigila was closed on Aug 31, 2024

Make validate step autonomous if sites given

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#76 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jun 7, 2024

Fasta fai and doc

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#94 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jul 10, 2024

Use nft-vcf

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#106 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Aug 23, 2024

Version ready for review v0.99.0

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#37 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Aug 31, 2024

Update metromap to match pipeline version

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Closed (completed).

#36 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jun 17, 2024

Run full scale test

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#38 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Jul 18, 2024

Include glimpse2 imputation tool

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#39 In nf-core/phaseimpute;

· by atrigila was closed on May 20, 2024

Add nf-test to the pipeline

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#43 In nf-core/phaseimpute;

· by LouisLeNezet was closed on May 27, 2024

Uniformize tools name

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#42 In nf-core/phaseimpute;

· by LouisLeNezet was closed on May 17, 2024

chr check does not work on dog datasets

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#98 In nf-core/phaseimpute;

· by atrigila was closed on Jul 16, 2024

Add required arguments as external params to start the pipeline

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#52 In nf-core/phaseimpute;

· by atrigila was closed on Jun 8, 2024

Handle --posfile param for --step impute (all tools)

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#73 In nf-core/phaseimpute;

· by atrigila was closed on Jun 6, 2024

Rewrite GLIMPSE1 subworkflow to use the panel preparation

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#55 In nf-core/phaseimpute;

· by LouisLeNezet was closed on May 27, 2024

error with --step simulate,impute and --tools stitch

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#61 In nf-core/phaseimpute;

· by atrigila was closed on May 27, 2024

create csv files from each step

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#62 In nf-core/phaseimpute;

· by atrigila was closed on Jun 2, 2024

simplify posfile generation and processing

enhancementNew feature or requestNew feature or request

Status: Closed (completed).

#57 In nf-core/phaseimpute;

· by atrigila was closed on May 27, 2024

Update all nf-test

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#154 In nf-core/phaseimpute;

· by LouisLeNezet was closed on Nov 13, 2024