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fix-linting.yml
1,148 workflow runs
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Collect intervallist channel output and propagate to genotyping step Fix linting from a comment #3307: Issue comment #1872 (comment) created by percyfal
June 23, 2025 07:10 1s
June 23, 2025 07:10 1s
Swap sentieon to nf-test and fix Fix linting from a comment #3306: Issue comment #1927 (comment) created by maxulysse
June 23, 2025 07:06 40s
June 23, 2025 07:06 40s
Fix issue when lane is 0 Fix linting from a comment #3305: Issue comment #1924 (comment) created by tdanhorn
June 20, 2025 20:20 Skipped
June 20, 2025 20:20 Skipped
Update ascat module Fix linting from a comment #3304: Issue comment #1922 (comment) created by SPPearce
June 20, 2025 14:18 1s
June 20, 2025 14:18 1s
Sarek parabricks gpu test_full: A USER ERROR has occurred: Bad input: Sample HCC1395_HCC1395N is not in BAM header: [sample] Fix linting from a comment #3303: Issue comment #1909 (comment) created by famosab
June 20, 2025 10:32 Skipped
June 20, 2025 10:32 Skipped
Add config for readgroups to fq2bam Fix linting from a comment #3302: Issue comment #1925 (comment) created by famosab
June 20, 2025 09:21 1s
June 20, 2025 09:21 1s
Add config for readgroups to fq2bam Fix linting from a comment #3301: Issue comment #1925 (comment) created by maxulysse
June 20, 2025 08:25 1s
June 20, 2025 08:25 1s
Fix issue when lane is 0 Fix linting from a comment #3300: Issue comment #1924 (comment) created by maxulysse
June 19, 2025 15:16 1s
June 19, 2025 15:16 1s
Add config for readgroups to fq2bam Fix linting from a comment #3299: Issue comment #1925 (comment) created by maxulysse
June 19, 2025 13:53 Skipped
June 19, 2025 13:53 Skipped
Fix issue when lane is 0 Fix linting from a comment #3298: Issue comment #1924 (comment) created by tdanhorn
June 17, 2025 17:27 1s
June 17, 2025 17:27 1s
Add config for readgroups to fq2bam Fix linting from a comment #3297: Issue comment #1925 (comment) created by famosab
June 17, 2025 13:44 Skipped
June 17, 2025 13:44 Skipped
Update ascat module Fix linting from a comment #3296: Issue comment #1922 (comment) created by maxulysse
June 17, 2025 13:00 2s
June 17, 2025 13:00 2s
Fix issue when lane is 0 Fix linting from a comment #3295: Issue comment #1924 (comment) created by maxulysse
June 17, 2025 12:36 1s
June 17, 2025 12:36 1s
Fix issue when lane is 0 Fix linting from a comment #3294: Issue comment #1924 (comment) created by SPPearce
June 17, 2025 12:09 1s
June 17, 2025 12:09 1s
Integer 0 value for lane column in samplesheet causes pipeline to break Fix linting from a comment #3293: Issue comment #1923 (comment) created by maxulysse
June 17, 2025 09:58 1s
June 17, 2025 09:58 1s
Sarek parabricks gpu test_full: A USER ERROR has occurred: Bad input: Sample HCC1395_HCC1395N is not in BAM header: [sample] Fix linting from a comment #3292: Issue comment #1909 (comment) created by famosab
June 16, 2025 12:46 1s
June 16, 2025 12:46 1s
Collect intervallist channel output and propagate to genotyping step Fix linting from a comment #3291: Issue comment #1872 (comment) created by FriederikeHanssen
June 16, 2025 12:44 1s
June 16, 2025 12:44 1s
fix versions+reports for CRAM_SAMPLEQC Fix linting from a comment #3290: Issue comment #1921 (comment) created by maxulysse
June 15, 2025 16:45 Skipped
June 15, 2025 16:45 Skipped
fix versions+reports for CRAM_SAMPLEQC Fix linting from a comment #3289: Issue comment #1921 (comment) created by maxulysse
June 15, 2025 16:38 2s
June 15, 2025 16:38 2s
GATK4_MARKDUPLICATES not respecting --TMP_DIR Fix linting from a comment #3288: Issue comment #1918 (comment) created by alexnater
June 13, 2025 10:58 1s
June 13, 2025 10:58 1s
Work with split chromosome and cram Fix linting from a comment #3287: Issue comment #1914 (comment) created by natir
June 12, 2025 08:44 1s
June 12, 2025 08:44 1s
Work with split chromosome and cram Fix linting from a comment #3286: Issue comment #1914 (comment) created by FriederikeHanssen
June 11, 2025 13:03 1s
June 11, 2025 13:03 1s
Work with split chromosome and cram Fix linting from a comment #3285: Issue comment #1914 (comment) created by natir
June 11, 2025 11:39 1s
June 11, 2025 11:39 1s
Add checks for uniqueness of sample ids and lane ids Fix linting from a comment #3284: Issue comment #1902 (comment) created by nf-core-bot
June 11, 2025 08:15 1s
June 11, 2025 08:15 1s
Add information on gatk_spark and save_output_as_bam Fix linting from a comment #3283: Issue comment #1896 (comment) created by nf-core-bot
June 11, 2025 07:41 1s
June 11, 2025 07:41 1s