Skip to content

Bump-blat #502

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Feb 28, 2025
Merged

Bump-blat #502

merged 3 commits into from
Feb 28, 2025

Conversation

apeltzer
Copy link
Member

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/smrnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@apeltzer apeltzer requested a review from dslarm February 27, 2025 09:46
Copy link
Member Author

@apeltzer apeltzer left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This should help with ARM support

@nf-core-bot
Copy link
Member

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

Copy link

github-actions bot commented Feb 27, 2025

nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit d68a722

+| ✅ 244 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   1 tests had warnings |!

❗ Test warnings:

❔ Tests ignored:

  • nextflow_config - Config default ignored: params.fastp_known_mirna_adapters

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2025-02-27 13:18:32

@apeltzer apeltzer enabled auto-merge February 27, 2025 12:53
Copy link

@dslarm dslarm left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM! Thanks!

@apeltzer apeltzer merged commit 7f0a1ed into dev Feb 28, 2025
7 checks passed
@apeltzer apeltzer deleted the bump-blat branch February 28, 2025 11:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants