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Multiple truth sets within the same run

enhancementNew feature or requestNew feature or request

Status: Open.

#202 In nf-core/variantbenchmarking;

· fellen31 opened on Jun 5, 2025

make test cases more realistic

enhancementNew feature or requestNew feature or request

Status: Open.

#201 In nf-core/variantbenchmarking;

· kubranarci opened on Jun 4, 2025

add vcfdist tool for benchmarking

enhancementNew feature or requestNew feature or request

Status: Open.

#199 In nf-core/variantbenchmarking;

· kubranarci opened on Jun 3, 2025

regions.csv file is not being merged

bugSomething isn't workingSomething isn't working

Status: Open.

#187 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025

SEQC2 test fails for rtgtools as malformatted INFO field in the truth

bugSomething isn't workingSomething isn't working

Status: Open.

#186 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025

integrate sarek results

Status: Open.

#185 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 17, 2025

igv-reports

backlog

enhancementNew feature or requestNew feature or request

Status: Open.

#184 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 16, 2025

add total stats for happy merging snps and indels

backlog

enhancementNew feature or requestNew feature or request

Status: Open.

#183 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 16, 2025

add indel distribution plot for SVs

enhancementNew feature or requestNew feature or request

Status: Open.

#182 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 16, 2025

add upset plot for TP/FP/FN numbers

enhancementNew feature or requestNew feature or request

Status: Open.

#181 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 7, 2025

improve plots/statistics

Status: Open.

#180 In nf-core/variantbenchmarking;

· kubranarci opened on Apr 7, 2025

Concordance test between VCFs

enhancementNew feature or requestNew feature or request

Status: Open.

#178 In nf-core/variantbenchmarking;

· kjellinjonas opened on Apr 3, 2025