Skip to content

Issues: nf-core/viralrecon

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort

Issues list

Check up if pipeline is up to date with TEMPLATE enhancement Improvement for existing functionality
#449 opened Dec 9, 2024 by maxulysse
Update all modules to the latest enhancement Improvement for existing functionality
#448 opened Dec 5, 2024 by LilyAnderssonLee 2.7
Addition of a parameter for the minimum depth to call a base enhancement Improvement for existing functionality good first issue Good for newcomers
#447 opened Nov 19, 2024 by cjjossart
custom schemes
#445 opened Oct 28, 2024 by rebeelouise
Include pango-designation version enhancement Improvement for existing functionality
#441 opened Sep 4, 2024 by Shettland
Error when running illumina command bug Something isn't working
#423 opened Apr 8, 2024 by fractaljc
Temp file problem in VARIANTS_IVAR:BCFTOOLS_SORT bug Something isn't working
#415 opened Jan 30, 2024 by Paururo
Properly deal with multiqc in the config files before the next release enhancement Improvement for existing functionality
#411 opened Jan 16, 2024 by maxulysse 2.7
Split authors in generated RO crate enhancement Improvement for existing functionality
#404 opened Nov 28, 2023 by renatocjn
Problem installing viralrecon bug Something isn't working
#399 opened Oct 13, 2023 by vilocha
Add QIAseq DIRECT SARS-CoV-2 Kit amplicons enhancement Improvement for existing functionality
#394 opened Aug 30, 2023 by dwinter
[bug] Fails to find FASTQ files when stored on S3 bug Something isn't working
#385 opened Jul 31, 2023 by adamrtalbot
Minimum frequency threshold is being ignored bug Something isn't working
#382 opened Jun 6, 2023 by AndreaAguadoM
Minia assembly is non-deterministic in parallel enhancement Improvement for existing functionality
#381 opened May 11, 2023 by tetedange13
Add support for artic primer set version V5.3.2 enhancement Improvement for existing functionality
#373 opened Mar 24, 2023 by mbdabrowska1
Add subworkflows to nf-core enhancement Improvement for existing functionality new subworkflow subworkflows
#371 opened Mar 24, 2023 by drpatelh
2 of 5 tasks
ProTip! Find all open issues with in progress development work with linked:pr.