Welcome to the nf-neuro project ! An open-source Nextflow modules and workflows repository for neuroimaging maintained by the SCIL team. Our goal is to provide Nextflow DSL2 optimized processing modules and workflows tailored to neuroimaging data.
nf-neuro aligns with the nf-core framework to streamline the development of neuroimaging pipelines !
- Extensive guidelines for the development of processing modules and workflows
- Well-designed and thorough tutorials with step-by-step walkthroughs
- Convenient distribution tools to install and upgrade pipeline components with ease
- All-in-one library for automated neuroimaging software, from dependencies to pipelines
- Development practices to guarantee processing efficiency, reliability and reproducibility
- Embeded quality assurance, continuous development and integration procedures
- Off-the-shelf compliance with HPC clusters and cloud computing infrastructures
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(2025) nf-neuro: Developing Maintainable Pipelines for Seamless Processing of Diffusion MRI.
Valcourt Caron, A; Boré, A; Edde, M; Gagnon, A; Thoumyre, S; Royer, A; Rheault, F; Descoteaux, M.
Proceedings of the ISMRM Workshop on 40 Years of Diffusion: Past, Present & Future Perspectives
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(2024) Mining diamonds with wooden hammers : getting diffusion MRI processing into the age of steel
Valcourt Caron, A; Boré, A; Edde, M; Thoumyre, S; Gagnon, A; Rheault, F; Descoteaux, M.
Proceedings of the 2024 Boston Nextflow Summit