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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 5

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 246 repositories
  • provenanceReporter Public
    oicr-gsi/provenanceReporter’s past year of commit activity
    Python 0 0 1 0 Updated May 9, 2025
  • msisensor Public

    msisensor-pro workflow

    oicr-gsi/msisensor’s past year of commit activity
    WDL 0 0 0 1 Updated May 9, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 3 Updated May 9, 2025
  • optitype Public

    Workflow for HLA genotyping prediction with optitype

    oicr-gsi/optitype’s past year of commit activity
    WDL 0 0 0 1 Updated May 9, 2025
  • mavis3 Public

    MAVIS workflow, annotation of structural variants

    oicr-gsi/mavis3’s past year of commit activity
    WDL 0 0 0 0 Updated May 9, 2025
  • mavis Public

    MAVIS workflow, annotation of structural variants

    oicr-gsi/mavis’s past year of commit activity
    WDL 0 1 0 0 Updated May 9, 2025
  • dashi Public

    Python Dash visualization of OICR QC data

    oicr-gsi/dashi’s past year of commit activity
    Python 4 MIT 2 0 1 Updated May 9, 2025
  • bamMergePreprocessing Public

    WDL workflow to filter, merge, mark duplicates, indel realign and base quality score recalibrate groups of related (e.g. by library, donor, project) lane level alignments

    oicr-gsi/bamMergePreprocessing’s past year of commit activity
    WDL 0 GPL-2.0 1 0 2 Updated May 9, 2025
  • DeepTumour Public Forked from LincolnSteinLab/DeepTumour

    Classifying tumor types based on Whole Genome Sequencing (WGS) data

    oicr-gsi/DeepTumour’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated May 9, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 5 8 2 Updated May 8, 2025
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