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1. JetBrains-Research/omnipeak JetBrains-Research/omnipeak Public

   A universal HMM-based peak caller capable of processing a broad range of ChIP-seq, ATAC-seq, and single-cell ATAC-seq datasets of different quality.

   Kotlin 3

2. JetBrains-Research/viktor JetBrains-Research/viktor Public

   Efficient f64-only ndarray in Kotlin

   Kotlin 133 6

3. JetBrains-Research/bioinf-commons JetBrains-Research/bioinf-commons Public

   Bioinformatics library in Kotlin

   Kotlin 34 3

4. JetBrains/ideavim JetBrains/ideavim Public

   IdeaVim – A Vim engine for JetBrains IDEs

   Kotlin 10k 802

5. JetBrains-Research/pubtrends JetBrains-Research/pubtrends Public

   Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers

   Jupyter Notebook 49 4

6. JetBrains-Research/pubtrends-review JetBrains-Research/pubtrends-review Public

   Automatic generation of reviews of scientific papers

   Jupyter Notebook 31 4