biomisc_R: command line bioinformatic scripts written in R

CpG_island_identificator.R: support for multi-fasta files added

biomisc_R: command line bioinformatic scripts written in R

CpG_island_identificator.R : id, strand and Obs columns added

biomisc_R

v9.0

scripts of extracting and removing sequences merged merged

biomisc_R

Changes

fasta and header choice merged into one script

biomisc_R

Scripts added

1. codon_optimization_multifasta_by_taxids.R for support of a spefic organism to codon optimize for each sequence
2. add_adapters_by_pair.R for support of a specific adapter pair for each sequence
3. ligate_by_pair.R for support of a specific plasmid pair for each sequence

biomisc_R

2 scripts added:

1. all_aas_content_multifasta.R for the calculation of all aminoacids content in each protein from a multi-fasta file
2. calculate_biophysical_properties_multifasta.R to calculate various biophysical properties of input proteins

biomisc_R

Changes:

1. add better description for argument --dir in codon_optimization_singlefastas.R
2. replace lapply() with sapply() in codon_optimization_multifasta.R

biomisc_R

Changes:

1. add reverse complement sequence
2. add codon optimization pipelines

biomisc_R

Changes:

1. fix bugs in %aa content identification,
2. CpG island identification program
3. split fasta sequences using sliding window

biomisc_R

v2.0

Update README.md