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update README #515

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update README #515

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eb007dc
update README
will-moore Sep 8, 2023
9c5110e
Dockerfile to use omero-web-standalone:5.21.0 for Django 3.6
will-moore Sep 8, 2023
43e4aee
Use OMEROHOST env name
will-moore Sep 12, 2023
e264b8b
Further tweaks to Docker instructions in README. Use omero-web-standa…
will-moore Dec 8, 2023
257f00d
Use FROM openmicroscopy/omero-web-standalone:5.21.0 Dockerfile
will-moore Dec 14, 2023
f35ae2e
remove 'without installing anything'
will-moore Dec 15, 2023
6b9416e
Clarify usage of grunt with Docker
will-moore Dec 15, 2023
ec524fb
More README Docker info tweaks
will-moore Dec 18, 2023
2659ac0
Add note to run docker in a different terminal after grunt watch
will-moore Jan 3, 2024
a6940e1
Run grunt in different terminal that doesn't have OMEROHOST
will-moore Jan 3, 2024
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2 changes: 1 addition & 1 deletion Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM openmicroscopy/omero-web-standalone:latest
FROM openmicroscopy/omero-web-standalone:5.21.0

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Suggested change
FROM openmicroscopy/omero-web-standalone:5.21.0
FROM openmicroscopy/omero-web-standalone:latest

as per @jburel's comment - this works fine for me

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@pwalczysko pwalczysko Jan 3, 2024 •
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this works fine for me

Sorry, have to eat my words. It works fine only up to a point. This means that the docker image builds fine, and the docker starts as expected. I am able to connect to demo server. But then:

  • if using the latest image, I am not able to watch the changes live as described in this README, for example changing the index.html file and renaming the Export PDF button does not appear immediately after refresh
  • if using the 5.21.0 image, I am able to watch the changes live, ie. the Export PDF button manipulation in the index.html is immediately visible after refresh of the browser

Adding -e CONFIG_omero_web_debug=true to the docker run... cmd with the latest build image does not help, still no changes visible after refresh. Note that the changes are visible if you stop the docker and run the docker run... cmd again - then it works even with the latest image

USER root
RUN yum -y install npm
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51 changes: 42 additions & 9 deletions README.rst
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Expand Up @@ -163,35 +163,68 @@ with:

$ grunt watch

It is also possible to develop figure in docker without installing anything locally.
The Docker image is built on top of ``openmicroscopy/omero-web-standalone:latest``, so you will have a fully functional
omero-web environment while developing ``omero-figure``.
First build the Docker image:

Local install
*************

You need an `omero-web` environment. You can either install it locally or use Docker (see below).
To install locally, we recommend that you use `conda` to install `omero-py` as described
at https://github.com/ome/omero-py and then perform a developer install of `omero-figure`
which will include `omero-web`:

::

$ cd omero-figure
$ pip install -e .

You'll also need to run the `omero config` steps detailed above.
See instructions at https://omero.readthedocs.io/en/latest/developers/Web/Deployment.html
for running the development server.

Using Docker
************

It is also possible to develop figure in docker without creating a python environment locally.
The Docker image at ``omero-figure/Dockerfile`` is built on top of
`openmicroscopy/omero-web-standalone:latest <https://hub.docker.com/r/openmicroscopy/omero-web-standalone>`_,
so you will have a fully functional omero-web environment while developing ``omero-figure``.
This Docker image includes OMERO.figure. You can either replace this with a link to your local ``omero-figure`` repo
or you can use the Docker copy of OMERO.figure for development.

In either case, start by building the Docker image and specify the server you wish to connect to:

::

$ cd omero-figure
$ docker build -t figure-devel .
$ export OMEROHOST=demo.openmicroscopy.org

To use your local ``omero-figure`` repo for development, you can mount this in place of the Docker ``omero-figure``.
You'll need `npm` and `grunt` installed locally and run `grunt watch` during development as described above.
You can refresh the Docker hosted page at http://localhost:4080/figure to see changes:

To develop ``omero-figure`` you can either make all the changes within the Docker container itself by running:
::

$ docker run -ti -e OMEROHOST -p 4080:4080 -v /PATH_TO_GIT_REPO/omero-figure:/home/figure/src figure-devel
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$ docker run -ti -e OMEROHOST=YOUR_HOST -p 4080:4080 figure-devel
# in a different terminal, run grunt build or watch...
$ cd /PATH_TO_GIT_REPO/omero-figure
$ grunt build # or grunt watch

The preferred option is to mount the repository containing the omero-figure code. Make the changes locally and see the changes in the docker container. To do so, run:

Alternatively, to run and develop ``omero-figure`` within the Docker container itself:
::
$ docker run -ti -e OMEROHOST=YOUR_HOST -p 4080:4080 -v /PATH_TO_GIT_REPO/omero-figure:/home/figure/src figure-devel

$ docker run -ti -e OMEROHOST -p 4080:4080 figure-devel
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After starting the container, run ``docker ps`` in another terminal to find the ID of the container. Then run:

::

$ docker exec -u 0 -it CONTAINER_ID bash # replace CONTAINER_ID by the correct value
$ cd /home/figure/src
$ grunt watch
$ vi src/js/app.js
$ grunt build # or run grunt watch in another terminal



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