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omnideconv

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  1. immunedeconv immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 485 101

  2. omnideconv omnideconv Public

    Unified access to several second-generation deconvolution methods

    HTML 71 15

  3. spacedeconv spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    R 41 7

  4. SimBu SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    R 16 1

  5. deconvBench deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    Jupyter Notebook 6 1

  6. methyldeconv methyldeconv Public

    Runs and compares different methylation based cell type deconvolution algorithms

    R 6

Repositories

Showing 10 of 21 repositories
  • SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    omnideconv/SimBu’s past year of commit activity
    R 16 GPL-3.0 1 5 2 Updated May 5, 2025
  • deconvExplorer Public
    omnideconv/deconvExplorer’s past year of commit activity
    R 4 1 5 2 Updated May 5, 2025
  • spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    omnideconv/spacedeconv’s past year of commit activity
    R 41 GPL-3.0 7 4 3 Updated May 5, 2025
  • omnideconv Public

    Unified access to several second-generation deconvolution methods

    omnideconv/omnideconv’s past year of commit activity
    HTML 71 GPL-3.0 15 20 2 Updated May 5, 2025
  • immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    omnideconv/immunedeconv’s past year of commit activity
    R 485 101 32 (1 issue needs help) 4 Updated May 5, 2025
  • deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    omnideconv/deconvBench’s past year of commit activity
    Jupyter Notebook 6 1 3 1 Updated Apr 23, 2025
  • DWLS Public Forked from PelzKo/dwls

    DWLS R package patched and maintained to be used in the omnideconv installation

    omnideconv/DWLS’s past year of commit activity
    R 1 3 0 0 Updated Apr 3, 2025
  • BayesPrism Public Forked from Danko-Lab/BayesPrism
    omnideconv/BayesPrism’s past year of commit activity
    HTML 0 51 0 0 Updated Mar 25, 2025
  • methyldeconv_analysis Public
    omnideconv/methyldeconv_analysis’s past year of commit activity
    R 0 0 0 0 Updated Mar 11, 2025
  • methyldeconv Public

    Runs and compares different methylation based cell type deconvolution algorithms

    omnideconv/methyldeconv’s past year of commit activity
    R 6 GPL-3.0 0 0 0 Updated Mar 10, 2025
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