[pre-commit.ci] pre-commit autoupdate #116

	name: Pipeline

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	- name: Lint workflow
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: workflow/Snakefile
	args: "--lint"

	tests:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: Noise model inference
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: workflow/Snakefile
	args: "--configfile=tests/noise_model/config.yaml --use-conda --show-failed-logs --cores=all --conda-cleanup-pkgs cache --conda-frontend=mamba tests/noise_model/noise/process.fits"

	- name: Bulk orbit inference
	uses: snakemake/[email protected]
	with:
	directory: .
	snakefile: workflow/Snakefile
	args: "--configfile=tests/noise_model/config.yaml --use-conda --show-failed-logs --cores=all --conda-cleanup-pkgs cache --conda-frontend=mamba tests/noise_model/inference/inferred.fits.gz"

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