imswitch-sim

This plugin will organize image acquisition and reconstruction of structured illumination microscopy data.

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This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Usage

To inclue this into the ImSwitch installation, you have to add the following items to your config:

"availableModules": "imswitch_sim"

  "imswitch_sim": {
    "monitorIdx": 2,
    "width": 1080,
    "height": 1920,
    "wavelength": 0,
    "pixelSize": 0,
    "angleMount": 0,
    "patternsDirWin": "C:\\Users\\wanghaoran\\Documents\\ImSwitchConfig\\imcontrol_slm\\488\\",
    "patternsDir": "/users/bene/ImSwitchConfig/imcontrol_sim/488",
    "isSimulation": 0,
    "nRotations": 3,
    "nPhases": 3,
    "isFastAPISIM": 1,
    "simPixelsize": 1,
    "simNA": 0,
    "simN": 0,
    "simETA": 0,
    "fastAPISIM_host": "192.168.0.1",
    "fastAPISIM_port": 0,
    "tWaitSequence": 0
  }

Installation

You can install imswitch-sim via pip:

pip install imswitch-sim

To install latest development version :

pip install git+https://github.com/openuc2/imswitch-sim.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the MIT license, "imswitch-sim" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.