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Use another genome/annotation?

Status: Open.

#123 In openvax/isovar;

· dining-philosopher opened on Aug 12, 2021

Can I specify which ensembl release to use by the isovar command line?

Status: Open.

#122 In openvax/isovar;

· nknewnew opened on Jan 20, 2021

RNA sequencing coverage

Status: Open.

#120 In openvax/isovar;

· nknewnew opened on May 20, 2020

get more than the top protein sequence

Status: Open.

#118 In openvax/isovar;

· drna opened on Nov 8, 2019

Weird chromosome bug in MT variant under GRCh38

Status: Open.

#116 In openvax/isovar;

· iskandr opened on Aug 2, 2019

Normalize counts by number of mapped reads to get CPM

Status: Open.

#112 In openvax/isovar;

· iskandr opened on Jun 18, 2019

Constructing wildtype peptides

Status: Open.

#100 In openvax/isovar;

· felixfrenkel opened on Jul 12, 2018

Variant sequence ... shorter than min allowed

Status: Open.

#99 In openvax/isovar;

· gilhornung opened on Jun 3, 2018

ASE for Synonymous + Non-synonymous Variants

Status: Open.

#93 In openvax/isovar;

· JPFinnigan opened on Mar 9, 2018

No exon_id in mouse mm9 ensembl annotaiotn

Status: Open.

#92 In openvax/isovar;

· weizhu365 opened on Mar 9, 2018

Isovar on multiple .bam

Status: Open.

#91 In openvax/isovar;

· JPFinnigan opened on Jan 21, 2018

Unexpectedly short protein sequences

Status: Open.

#90 In openvax/isovar;

· iskandr opened on Nov 27, 2017