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Add variant and effect classes for gene fusions

Status: Open.

#252 In openvax/varcode;

· iskandr opened on May 2, 2024

Insertion effect from SNV?

Status: Open.

#250 In openvax/varcode;

· iskandr opened on Oct 11, 2023

pyvcf dependency is causing installation failure on setuptools>=58

Status: Open.

#247 In openvax/varcode;

· susannasiebert opened on Oct 11, 2021

error on nonframeshift deletion

Status: Open.

#246 In openvax/varcode;

· mpallocc opened on Jan 8, 2020

Make liftover between genomes explicit method

Status: Open.

#243 In openvax/varcode;

· iskandr opened on Oct 7, 2019

Add a <code>difference</code> set operation to VariantCollection

Status: Open.

#229 In openvax/varcode;

· julia326 opened on Feb 16, 2018

EffectCollection is not sorted by priority by default

bug

Status: Open.

#227 In openvax/varcode;

· tavinathanson opened on Sep 9, 2017

Order of VariantCollection with sort_key=None

Status: Open.

#220 In openvax/varcode;

· iskandr opened on Apr 1, 2017

Use HGVS format for Silent.short_description

Status: Open.

#217 In openvax/varcode;

· joaoe opened on Mar 17, 2017

Fix short_description for PrematureStop with empty aa_ref

Status: Open.

#216 In openvax/varcode;

· joaoe opened on Mar 15, 2017

What if the ref allele is a common SNP?

Status: Open.

#215 In openvax/varcode;

· johannesreiter opened on Mar 6, 2017

Allow specification of ensembl release as part of genome on commandline

Status: Open.

#214 In openvax/varcode;

· iskandr opened on Mar 3, 2017