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reporting of coding variants with rna support

Status: Open.

#205 In openvax/vaxrank;

· kcotto-shennon opened on Mar 31, 2025

WUSTL API is retired

Status: Open.

#204 In openvax/vaxrank;

· timodonnell opened on Jan 6, 2025

Vaxrank 1.4.0 ignores --min-alt-rna-reads lower value than default

Status: Open.

#203 In openvax/vaxrank;

· julia326 opened on Sep 18, 2024

Add more predictions to EpitopePrediction

Status: Open.

#201 In openvax/vaxrank;

· iskandr opened on May 10, 2024

Make scoring, filtering, and ranking rules configurable

Status: Open.

#199 In openvax/vaxrank;

· iskandr opened on Apr 28, 2024

Build issues with jinja2.ext

Status: Open.

#197 In openvax/vaxrank;

· saraahwallace opened on Aug 28, 2023

ValueError: Invalid contig name 'chr14_GL000194v1_random' for reference 'GRCh38'

Status: Open.

#193 In openvax/vaxrank;

· leldershaw opened on May 14, 2021

ValueError: Unable to infer reference genome

Status: Open.

#192 In openvax/vaxrank;

· Shuhui-d opened on Dec 29, 2020

Vaxrank '--output-neoepitope-report' fails on StopLoss variants

Status: Open.

#189 In openvax/vaxrank;

· JPFinnigan opened on Jun 8, 2020

Add N-terminal methionine check to manufacturability

Status: Open.

#188 In openvax/vaxrank;

· julia326 opened on Apr 15, 2020

Use faster k-mer index for proteome instead of full FM index

Status: Open.

#183 In openvax/vaxrank;

· iskandr opened on Feb 11, 2020

Rename "epitope" to "MHC ligand"

Status: Open.

#181 In openvax/vaxrank;

· iskandr opened on Feb 11, 2020