updated RS18 muscle json #403
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| name: C/C++ CI | |
| on: | |
| push: | |
| branches: [ "main", "development", "experimental", "test*" ] | |
| pull_request: | |
| branches: [ "main", "development", "experimental", "test*" ] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| runs-on: [ubuntu-latest, ubuntu-22.04, macos-latest, macos-14 ] | |
| python-version: [ "3.10", "3.12" ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: C++ info | |
| run: g++ -v | |
| - name: Install graphviz | |
| uses: ts-graphviz/setup-graphviz@v2 | |
| with: | |
| # Skip to run brew update command on macOS. | |
| macos-skip-brew-update: 'true' # default false | |
| - name: Install dependencies (Ubuntu) | |
| run: sudo apt-get install -y nlohmann-json3-dev tree graphviz openjdk-11-jdk | |
| if: ${{ contains(matrix.runs-on, 'ubuntu') }} | |
| - name: Install dependencies (macOS) | |
| run: brew install nlohmann-json tree | |
| if: ${{ contains(matrix.runs-on, 'macos') }} | |
| - name: Run C++ tests | |
| run: | | |
| make tests | |
| ./tests | |
| - name: Test C++/Python interactions | |
| run: | | |
| cd test_files | |
| ./test.sh | |
| - name: Test makefile | |
| run: make | |
| - name: Install Python requirements | |
| run: | | |
| pip install NEURON==8.2.6 | |
| pip install OSBModelValidation | |
| pip install pyNeuroML | |
| pip install numpy matplotlib | |
| pip install ruff | |
| - name: Test directly running main program | |
| run: | | |
| ./main -p 6 # Note: small population of 6 for quick runtime | |
| ls -alth | |
| - name: Test Python command line script | |
| run: | | |
| python run_main.py -R 1233 -p 6 --doEvol --outputFolderName exampleRun2 # Note: small population of 6 for quick runtime | |
| - name: Test using test_all.sh | |
| run: | | |
| which nrniv | |
| export NEURON_HOME=$pythonLocation | |
| env | |
| ./test_all.sh # also generated neuroml | |
| git diff exampleRun/phenotype.dat | |
| - name: list generated files | |
| run: | | |
| ls -alth | |
| tree | |
| pip list |