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    17 repositories

    • AIDAmri

      Public
      Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
      Python
      •
      GNU General Public License v3.0
      •12•30•0•0•Updated Jul 31, 2025Jul 31, 2025

    • website

      Public
      Aswendt Lab Website
      HTML
      •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

    • 2025_Klein_Behaviour

      Public
      Recovery after Stroke in Humans
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • Tools

      Public
      Helper tools for working with AIDA software
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • AIDAqc

      Public
      An automated and simple tool for fast quality analysis of animal MRI
      quality-controlmripreclinical-imagingoutlier-detectionghostingmutual-informationrelativemovement-detectionsnrtsnr
      Python
      •
      GNU General Public License v3.0
      •4•5•6•0•Updated May 30, 2025May 30, 2025

    • MRI_Standardization_AIDAqc

      Public
      Small animal MRI Standardization initiative using AIDAqc
      GNU General Public License v3.0
      •1•2•0•0•Updated May 5, 2025May 5, 2025

    • AIDAconnect

      Public
      Mouse brain network analysis of rs-fMRI and DTI data using graph theory
      MATLAB
      •
      GNU General Public License v3.0
      •6•10•1•0•Updated Dec 19, 2024Dec 19, 2024

    • Project_Diffusion_MCAO_PT

      Public
      Repository with code to replicate the analysis of structural connectivity in MCAO and PT stroke mouse diffusion MRI data.
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • orthanc-icf-ui

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • inm-icf-utilities

      Public
      Python
      •
      MIT License
      •5•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • AIDAqc_Figures

      Public
      These codes were used to create the plots for the following publication: tbd
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • AIDAhisto

      Public
      Atlas-based imaging data analysis tool for quantitative mouse brain histology (AIDAhisto)
      MATLAB
      •2•4•0•0•Updated Aug 24, 2024Aug 24, 2024

    • AIDAmri-docs

      Public
      Documentary of Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain.
      Python
      •0•0•0•0•Updated Jun 1, 2024Jun 1, 2024

    • 2023_Kuhnhaeuser_PSS_code

      Public
      Code relevant for this publication
      Python
      •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

    • Project_Microbiome

      Public
      Project repository rs-fMRI of germfree and naïve mice with/without cortical stroke
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 22, 2021Jun 22, 2021

    • Project-C3a_peri-infarct

      Public
      Project repository C3a peri-infarct study
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 10, 2021Mar 10, 2021

    • AIDAdb

      Public
      Online research database to acquire and manage preclinical experiments
      1•0•0•0•Updated Mar 30, 2020Mar 30, 2020