Repositories list

• BV-BRC-Web

  Public
  The BV-BRC Web Application

  javascriptbioinformaticsgenomics+ 5viralbacterialdojotoolkitresource-centernodejs

  JavaScript

  •

  MIT License

  •25•8•1•7•Updated Aug 1, 2025Aug 1, 2025

• p3_genome_annotation

  Public
  PATRIC genome annotation application code

  Perl

  •4•2•1•0•Updated Jul 30, 2025Jul 30, 2025

• p3_solr_pipeline

  Public
  Perl

  •1•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• p3_cli

  Public
  PATRIC command line interface scripts

  Perl

  •5•1•0•1•Updated Jul 25, 2025Jul 25, 2025

• BV-BRC-Docs

  Public
  The BV-BRC Documentation

  sphinxrestructuredtextpython+ 2markdowndocumentation

  Python

  •13•4•0•1•Updated Jul 21, 2025Jul 21, 2025

• typecomp

  Public
  PATRIC Type Compiler

  Perl

  •

  MIT License

  •1•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• bvbrc_lowvan

  Public
  Wrapper for Jim Davis' lovan viral annotation tool.

  Perl

  •1•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• BV-BRC-Copilot-API

  Public
  Python

  •2•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• p3_code

  Public
  SEEDtk Fragment Shared with PATRIC

  Perl

  •3•0•0•0•Updated Jul 17, 2025Jul 17, 2025

• bvbrc_WholeGenomeSNPAnalysis

  Public
  Python

  •1•0•0•0•Updated Jul 17, 2025Jul 17, 2025

• bvbrc_CoreGenomeMLST

  Public
  Perl

  •1•0•0•0•Updated Jul 17, 2025Jul 17, 2025

• app_service

  Public
  Application execution service.

  Perl

  •17•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• primer-schemes

  Public
  Primer schemes for real-time genome epidemiology

  Python

  •

  Creative Commons Attribution 4.0 International

  •42•0•0•0•Updated Jul 1, 2025Jul 1, 2025

• bvbrc_TreeSort

  Public
  Python

  •1•0•0•1•Updated Jun 26, 2025Jun 26, 2025

• runtime_build

  Public
  Perl

  •

  MIT License

  •2•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• Workspace

  Public
  Perl

  •

  MIT License

  •10•1•33•4•Updated Jun 19, 2025Jun 19, 2025

• BV-BRC-API

  Public
  This repository contains source code for BV-BRC Data API service

  nodejsapihacktoberfest

  CSS

  •

  MIT License

  •12•5•3•9•Updated Jun 12, 2025Jun 12, 2025

• BV-BRC-Solr

  Public
  BV-BRC Solr Cloud schema repo

  Shell

  •6•2•0•0•Updated May 21, 2025May 21, 2025

• homebrew-BV-BRC-Dev

  Public
  Ruby

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• bvbrc_module_template

  Public template
  Makefile

  •0•0•0•0•Updated May 15, 2025May 15, 2025

• bvbrc_standalone_apps

  Public
  Self-contained BVBRC backend service implementations.

  Perl

  •1•0•0•0•Updated May 15, 2025May 15, 2025

• p3_assembly

  Public
  Python

  •

  MIT License

  •4•0•0•0•Updated May 15, 2025May 15, 2025

• p3_core

  Public
  Core library modules & scripts for PATRIC API integration

  Perl

  •6•0•0•1•Updated May 7, 2025May 7, 2025

• homology_service

  Public
  Perl

  •

  MIT License

  •3•0•0•0•Updated May 6, 2025May 6, 2025

• viral_annotation

  Public
  Viral annotation tools.

  Perl

  •2•0•0•0•Updated Apr 29, 2025Apr 29, 2025

• bvbrc_ceirr_data_submission

  Public
  Perl

  •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• bvbrc_family_anno_server

  Public
  Pattyfam/Protein function annotation server

  C++

  •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• homebrew-BV-BRC-CLI

  Public
  Formula repo for homebrew tap

  Ruby

  •0•1•0•0•Updated Feb 24, 2025Feb 24, 2025

• BV-BRC-CLI

  Public
  The BV-BRC Command Line Interface

  MIT License

  •2•13•1•0•Updated Feb 24, 2025Feb 24, 2025

• dev_container

  Public
  build and deployment environment

  Makefile

  •

  MIT License

  •4•0•6•0•Updated Feb 24, 2025Feb 24, 2025