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    469 repositories

    • phylophoenix

      Public
      🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
      Python
      •
      Apache License 2.0
      •0•4•1•1•Updated Jul 1, 2025Jul 1, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •30•75•13•0•Updated Jul 1, 2025Jul 1, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •3•2•0•0•Updated Jun 30, 2025Jun 30, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •30•44•0•9•Updated Jun 30, 2025Jun 30, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •7•7•0•0•Updated Jun 30, 2025Jun 30, 2025

    • forecasttools

      Public
      R tools for short-term forecasting
      R
      •
      Apache License 2.0
      •2•4•29•2•Updated Jun 30, 2025Jun 30, 2025

    • ShareIT-Act

      Public
      This repositories contain a set of documentation to satisfy H.R.9566 - SHARE IT Act.
      governanceshareit
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•1•1•1•Updated Jun 30, 2025Jun 30, 2025

    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      •
      Apache License 2.0
      •2•8•34•2•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-DataIngestion

      Public
      Data Ingestion for Modernization of NEDSS Project by Enquizit
      Java
      •
      Apache License 2.0
      •5•6•0•10•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •4•2•0•24•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-Modernization

      Public
      Java
      •5•21•0•7•Updated Jun 30, 2025Jun 30, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •64•60•183•24•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-DataCompare

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•2•Updated Jun 30, 2025Jun 30, 2025

    • hubverse-annotator

      Public
      Local web application that loads hubverse formatted tables and plots model forecasts, enabling the end user to compare and annotate models.
      applicationdata-sciencehubverseinfectious-disease-modeling
      Python
      •
      Apache License 2.0
      •0•3•16•2•Updated Jun 30, 2025Jun 30, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •44•79•1.2k•117•Updated Jun 30, 2025Jun 30, 2025

    • cfa-config-generator

      Public
      Python
      •
      Apache License 2.0
      •2•1•5•2•Updated Jun 30, 2025Jun 30, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •2•6•30•2•Updated Jun 30, 2025Jun 30, 2025

    • dibbs-ecr-refiner

      Public
      The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.
      XSLT
      •
      Apache License 2.0
      •0•2•31•2•Updated Jun 30, 2025Jun 30, 2025

    • dibbs-ecr-viewer

      Public
      DIBBS eCR Viewer
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•7•116•6•Updated Jun 30, 2025Jun 30, 2025

    • dibbs-aws

      Public template
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •2•4•1•0•Updated Jun 30, 2025Jun 30, 2025

    • PyRenew

      Public
      Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
      packageepidemiologyrenewal-processinfectious-disease-models
      Python
      •
      Apache License 2.0
      •6•16•51•0•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-SystemAdminGuide

      Public
      SCSS
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • NEDSS-DataReporting

      Public
      Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      •
      Apache License 2.0
      •5•2•0•7•Updated Jun 30, 2025Jun 30, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•11•57•0•Updated Jun 30, 2025Jun 30, 2025

    • terraform-aws-dibbs-ecr-viewer

      Public
      HCL
      •
      Apache License 2.0
      •3•2•2•0•Updated Jun 30, 2025Jun 30, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •22•17•11•0•Updated Jun 30, 2025Jun 30, 2025

    • wastewater-informed-covid-forecasting

      Public
      Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      •
      Apache License 2.0
      •13•48•81•1•Updated Jun 30, 2025Jun 30, 2025

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      nextjsfhirpublichealthfhir-clientdibbs
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •5•9•53•4•Updated Jun 30, 2025Jun 30, 2025

    • pygriddler

      Public
      "Griddles" of parameters
      Python
      •2•3•7•4•Updated Jun 30, 2025Jun 30, 2025

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •7•11•41•7•Updated Jun 30, 2025Jun 30, 2025