Repositories list

• CCLE-metabolic-features

  Public
  features extracted from CCLE database via constraint-based modelling

  0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

• COBRAxy

  Public
  Python

  •1•3•1•0•Updated Jun 19, 2025Jun 19, 2025

• DeadCell_analysis

  Public
  Scripts and data used for the paper "Identifying Damage-Related Features in scRNA-seq Data"

  Jupyter Notebook

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• scFBApy

  Public
  Python

  •0•0•0•0•Updated Nov 5, 2023Nov 5, 2023

• FalseDiscoveriesAnalysis

  Public
  Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis

  biomedical-informaticscobrapybiotechnology+ 4metabolic-modelsmetabolic-networkflux-balance-analysisflux-analysis

  Jupyter Notebook

  •0•3•0•0•Updated Nov 3, 2023Nov 3, 2023

• RASpy

  Public
  RASpy: a Scanpy Extension for Metabolic ReactionActivity Analysis

  Jupyter Notebook

  •0•0•0•0•Updated Sep 15, 2023Sep 15, 2023

• DenoisingFBA

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

• Prediction_Flavoprotein_EM

  Public
  This repository contains the data and script used for the manuscript "Machine learning for efficient prediction of protein redox potential: the flavoproteins case" submitted to the Journal of Chemical Information and Modeling.

  Jupyter Notebook

  •3•2•1•0•Updated Mar 15, 2023Mar 15, 2023

• efficientFVA

  Public
  Python

  •0•0•0•0•Updated Oct 30, 2022Oct 30, 2022