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    94 repositories

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •41•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • wdl-common

      Public
      Fork of PacBio's wdl-common repo
      WDL
      •
      BSD 3-Clause Clear License
      •9•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • cromwell-on-gcp-workbench-engine-installer

      Public
      Documentation and tools for creating a Cromwell installation on GCP compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•3•0•0•Updated Jul 18, 2025Jul 18, 2025

    • dnastack-client

      Public
      The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python
      pythonclientworkflowpython3omicsga4ghga4gh-wesdnastackga4gh-data-connectga4gh-service-registry
      Python
      •
      Apache License 2.0
      •0•0•2•3•Updated Jul 18, 2025Jul 18, 2025

    • bioinformatics-public-docker-images

      Public
      Dockerfile
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • data-connect-trino

      Public
      Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto
      publisheractivetrinodata-connect
      Java
      •
      Apache License 2.0
      •3•4•2•1•Updated Jul 17, 2025Jul 17, 2025

    • concourse-oci-helm-chart-resource

      Public
      Concourse resource for Helm charts in OCI registries
      Go
      •
      Apache License 2.0
      •1•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • actuator-e2e-test

      Public
      Library for testing /actuator endpoint
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • logback-extensions

      Public
      Extensions to logback for smoother integration with cloud environments.
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Jul 10, 2025Jul 10, 2025

    • iceberg

      Public
      Apache Iceberg
      Java
      •
      Apache License 2.0
      •2.7k•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • cromwell-wes-service

      Public
      Java
      •
      GNU Lesser General Public License v2.1
      •1•10•0•0•Updated Jun 25, 2025Jun 25, 2025

    • wdl-ci

      Public
      Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
      wdl
      Python
      •
      GNU General Public License v2.0
      •1•5•1•3•Updated Jun 10, 2025Jun 10, 2025

    • aws-healthomics-engine-installer

      Public
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•2•0•0•Updated May 9, 2025May 9, 2025

    • cromwell-on-azure-workbench-engine-installer

      Public
      Documentation and tools for creating a CromwellOnAzure installation compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•1•0•0•Updated Apr 29, 2025Apr 29, 2025

    • concourse-helm3-resource

      Public
      Concourse resource to deploy Helm v3 charts.
      Shell
      •63•0•0•1•Updated Apr 4, 2025Apr 4, 2025

    • temp-test-repo-three

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • temp-test-repo-two

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • temp-test-repo-one

      Public
      0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • ga4gh-search-adapter-google-sheets

      Public
      Dataset API wrapper for Google Sheets
      Java
      •
      Apache License 2.0
      •0•1•0•2•Updated Dec 10, 2024Dec 10, 2024

    • bioinformatics-scripts

      Public
      Scripts and resources for the bioinformatics team
      Shell
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Jan 25, 2024Jan 25, 2024

    • ismb-2022-ga4gh-tutorial

      Public archive
      ISMB 2022 tutorial on FASP and Starter Kit
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • gatekeeper

      Public archive
      Gatekeeper
      Java
      •
      Other
      •0•0•0•1•Updated Sep 11, 2023Sep 11, 2023

    • wdl-mothur

      Public
      wdl-mothur is a repository featuring a Workflow Description Language (WDL) pipeline for seamless processing of 16S rRNA data using Mothur, enabling reproducible and customizable analysis of microbial communities.
      WDL
      •1•0•1•0•Updated Aug 21, 2023Aug 21, 2023

    • sentieon-amazon-omics

      Public
      Sentieon pipelines for Amazon Omics
      WDL
      •
      BSD 2-Clause "Simplified" License
      •4•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • data-explorer

      Public archive
      The simplest, fastest way to get business intelligence and analytics to everyone in your company 😋
      Clojure
      •
      Other
      •5.7k•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • Harmony-RNA-Workflow

      Public
      Workflow for Single-cell RNA Measurements using Seurat
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • Workbench-Azure-SaaS-Accelerator

      Public
      A reference example with sample code for developers interested publishing transactable, Software as a-Service offers in the Microsoft commercial marketplace.
      C#
      •
      MIT License
      •347•0•0•0•Updated Jun 7, 2023Jun 7, 2023

    • ga4gh-discovery-search

      Public archive
      GA4GH Search API specification.
      Apache License 2.0
      •14•1•0•0•Updated May 17, 2023May 17, 2023

    • commit-plantuml-action

      Public archive
      This action generate diagrams (png) from PlantUML files (*.puml), and commit to pull-request. Also this can add review comment of diff files.
      Shell
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated May 12, 2023May 12, 2023

    • healthcare-federated-access-services

      Public archive
      Go
      •
      Apache License 2.0
      •9•0•0•0•Updated May 9, 2023May 9, 2023