Repositories list

• GrEBI

  Public
  HPC aggregation pipeline for LLM-mediated knowledge graphs

  Jupyter Notebook

  •

  Apache License 2.0

  •0•2•2•0•Updated Jul 18, 2025Jul 18, 2025

• ols4

  Public
  The EMBL-EBI Ontology Lookup Service (OLS)

  bioinformaticslinked-datardf+ 7semantic-webowlknowledge-graphontologiesknowledge-managementknowledge-representationfair-data

  Java

  •

  Apache License 2.0

  •26•67•114•10•Updated Jul 18, 2025Jul 18, 2025

• gwas-ui

  Public
  JavaScript

  •

  Apache License 2.0

  •4•5•16•5•Updated Jul 17, 2025Jul 17, 2025

• oxo2

  Public
  A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Jul 15, 2025Jul 15, 2025

• gwas-data-services

  Public
  Java

  •

  Apache License 2.0

  •0•0•2•0•Updated Jul 15, 2025Jul 15, 2025

• gwas-data-commons

  Public
  This repo will be having common components used across multiple services

  Java

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 15, 2025Jul 15, 2025

• efo

  Public
  Github repo for the Experimental Factor Ontology (EFO)

  Makefile

  •14•58•188•9•Updated Jul 15, 2025Jul 15, 2025

• gwas-deposition-ui

  Public
  Deposition application for submitting GWAS data.

  JavaScript

  •

  Apache License 2.0

  •1•2•9•8•Updated Jul 14, 2025Jul 14, 2025

• gwas-sumstats-service

  Public
  Summary statistics service

  Python

  •0•3•20•12•Updated Jul 11, 2025Jul 11, 2025

• goci

  Public
  GWAS Catalog Ontology and Curation Infrastructure

  Java

  •

  Apache License 2.0

  •19•26•279•9•Updated Jul 7, 2025Jul 7, 2025

• gwas-sumstats-tools

  Public
  gwas-sumstats-tools

  Python

  •

  Apache License 2.0

  •1•11•4•1•Updated Jul 7, 2025Jul 7, 2025

• zooma

  Public
  ZOOMA - Optimal Ontology Mapping Application. http://www.ebi.ac.uk/spot/zooma.

  Java

  •

  Apache License 2.0

  •11•26•37•5•Updated Jul 1, 2025Jul 1, 2025

• gwas-rest-api

  Public
  Refactoring Code for Rest API

  Java

  •

  Apache License 2.0

  •0•0•2•0•Updated Jul 1, 2025Jul 1, 2025

• june-2025-phenio-debugging

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

• eqtl-sumstats-service

  Public
  eQTL Summary Statistics Service

  Python

  •0•0•11•0•Updated Jun 27, 2025Jun 27, 2025

• gwas-sumstats-harmoniser

  Public
  GWAS Summary Statistics Data Harmonisation

  Python

  •17•23•10•9•Updated Jun 27, 2025Jun 27, 2025

• stats-app

  Public
  Repository for fetching internal access stats of SPOT resources

  Python

  •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

• zooma2sssom

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Jun 18, 2025Jun 18, 2025

• gwasdepo-deposition-service

  Public
  Java

  •

  Apache License 2.0

  •1•0•9•3•Updated Jun 13, 2025Jun 13, 2025

• gwasdepo-audit-service

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

• gwasdepo-commons

  Public
  Java

  •

  Apache License 2.0

  •0•0•1•0•Updated Jun 10, 2025Jun 10, 2025

• gwas-fix-existing-obsolete-traits

  Public
  Java

  •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

• gwas-assoc-tools

  Public
  Python

  •

  Apache License 2.0

  •0•0•5•0•Updated Jun 5, 2025Jun 5, 2025

• gwas-utils

  Public
  Collection of tools and scripts to manage GWAS Catalog related infrastructure.

  quality-controltoolboxdata-release

  Python

  •3•6•4•6•Updated Jun 3, 2025Jun 3, 2025

• gwas-template-services

  Public
  Application to provide template related services for the deposition interface

  Python

  •1•5•5•11•Updated May 27, 2025May 27, 2025

• gwasdepo-template-validator

  Public
  Java

  •

  Apache License 2.0

  •0•0•2•0•Updated May 20, 2025May 20, 2025

• gwas-curation-service

  Public
  Java

  •0•0•11•2•Updated May 19, 2025May 19, 2025

• gwasdepo-master

  Public
  Apache License 2.0

  •0•0•0•9•Updated May 19, 2025May 19, 2025

• gwas_harm_status

  Public
  JavaScript

  •0•0•0•0•Updated May 15, 2025May 15, 2025

• otar_profiler

  Public
  Pipeline for creating Open Targets profile and slim files from EFO.

  Ruby

  •0•4•0•0•Updated May 15, 2025May 15, 2025