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    61 repositories

    • beacon-template-ui

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•0•1•Updated Jun 26, 2025Jun 26, 2025

    • beacon2-pi-api

      Public
      Beacon v2 Production Implementation (API)
      Python
      •
      Apache License 2.0
      •8•7•1•1•Updated Jun 24, 2025Jun 24, 2025

    • fega-metadata-schema

      Public
      Repository dedicated to the development of the Federated EGA (FEGA) metadata schemas and documentation
      MIT License
      •1•1•2•0•Updated Jun 19, 2025Jun 19, 2025

    • FEGA-Portals

      Public
      Repository to track issues about FEGA Submission (UI & API) and Helpdesk portals
      Creative Commons Attribution Share Alike 4.0 International
      •0•2•12•0•Updated Jun 12, 2025Jun 12, 2025

    • beacon-ri-documentation

      Public
      TypeScript
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • beacon2-ri-tools-v2

      Public
      Python
      •
      Apache License 2.0
      •8•3•5•1•Updated Jun 5, 2025Jun 5, 2025

    • beacon-network-facade

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated May 27, 2025May 27, 2025

    • beacon2-ri-api-cancer

      Public
      Beacon v2 Cancer Reference Implementation (API)
      Python
      •
      Apache License 2.0
      •37•0•0•0•Updated May 27, 2025May 27, 2025

    • phenopackets-to-BFF

      Public
      Python
      •0•2•0•0•Updated May 23, 2025May 23, 2025

    • crypt4gh

      Public
      GA4GH cryptographic tools
      cryptographyegaga4ghcrgcryptography-toolsega-archivecrypt4gh
      Python
      •
      Apache License 2.0
      •12•18•1•0•Updated May 7, 2025May 7, 2025

    • la-marato-browser

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 29, 2025Apr 29, 2025

    • ega-biomongo-tools

      Public
      BioMongoDB is envisioned as a MongoDB database to facilitate the storage of information derived from various initiatives within the BioTeam.
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • refgenDetector

      Public
      Tool to infer the human reference genome used to create an alignment file.
      Python
      •
      Other
      •0•1•0•0•Updated Mar 24, 2025Mar 24, 2025

    • beacon-verifier-v2

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 19, 2025Mar 19, 2025

    • FEGA-onboarding

      Public
      Collection of onboarding materials for establishing a Federated EGA Node.
      elixiregacrgebicrypt4ghega-archivefederated-ega
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •26•0•9•0•Updated Feb 14, 2025Feb 14, 2025

    • EGA-beacon-browser

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • beacon2-ri-api

      Public
      Beacon v2 Reference Implementation (API)
      JavaScript
      •
      Apache License 2.0
      •37•17•15•11•Updated Dec 13, 2024Dec 13, 2024

    • allele-frequency-browser

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • LocalEGA

      Public
      A federated storage for sensitive data
      elixiregacrglocalegacrypt4ghega-archive
      Python
      •
      Apache License 2.0
      •17•7•0•0•Updated Oct 11, 2024Oct 11, 2024

    • EuCanImage-FHIR

      Public
      EuCanImage FHIR ETL
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • beacon2-ri-api-images

      Public
      Beacon v2 Images Reference Implementation (API)
      JavaScript
      •
      Apache License 2.0
      •37•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • ega-download-client

      Public
      A Python-based EGA download client
      Python
      •
      Apache License 2.0
      •53•101•12•3•Updated Sep 20, 2024Sep 20, 2024

    • crypt4gh-rust

      Public
      Rust implementation for the Crypt4GH encryption format
      cryptographyegaga4ghcrgcryptography-toolsega-archivecrypt4gh
      Rust
      •
      Apache License 2.0
      •2•5•1•0•Updated Aug 5, 2024Aug 5, 2024

    • sarek-IMPaCT-data-QC

      Public
      Implementation of the IMPaCT-data quality control workflow for WES data in nf-core/sarek workflow. Which is an analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing.
      Nextflow
      •
      MIT License
      •449•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • LocalEGA-distribution

      Public
      Distribution system for a Federated EGA node
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • LocalEGA-inbox

      Public
      OpenSSH dropbox, with remote user credentials and notifications for file system events
      Dockerfile
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • EGA-auth

      Public
      Linux NSS module for authentication of Federated EGA users
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • beacon2-ri-tools

      Public
      Beacon v2 Reference Implementation (Data ingestion tools)
      bioinformaticsmongodbgenomicsphenotypicreference-implementationbffphenopacketega-archivebeacon-v2beacon-friendly-format
      Perl
      •
      GNU General Public License v3.0
      •9•7•1•1•Updated Aug 8, 2023Aug 8, 2023

    • ega-zuulproxy

      Public
      A front end for the EGA data API. Required for ELIXIR integration. Provides Load Balancing, Traffic Shaping, Automated Retries.
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Jun 20, 2023Jun 20, 2023

    • ega-quickview

      Public
      FUSE file system to access EGA files securely and remotely
      C
      •
      GNU Lesser General Public License v2.1
      •0•4•0•0•Updated May 12, 2023May 12, 2023