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    17 repositories

    • scShift

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • SERVE

      Public
      A developed pipeline for expressed endogenous retrovirus identification.
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • toil

      Public
      A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
      Python
      •
      Apache License 2.0
      •241•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • Cas12f

      Public
      Perl
      •3•0•0•0•Updated May 10, 2023May 10, 2023

    • forgi

      Public
      An RNA manipulation library.
      Python
      •
      GNU General Public License v3.0
      •32•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • CRISPRCasTyper

      Public
      CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
      Python
      •
      MIT License
      •20•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • sceasy

      Public
      A package to help convert different single-cell data formats to each other
      R
      •
      GNU General Public License v3.0
      •62•0•0•0•Updated Aug 22, 2022Aug 22, 2022

    • scAPA

      Public
      This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •14•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • weblogo

      Public
      WebLogo 3: Sequence Logos redrawn
      Python
      •
      Other
      •38•0•0•0•Updated Dec 20, 2021Dec 20, 2021

    • scPNMF

      Public
      HTML
      •
      MIT License
      •2•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • TRACR_RNA

      Public
      Python
      •7•0•0•0•Updated Feb 8, 2021Feb 8, 2021

    • PHATE

      Public
      PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
      Python
      •
      GNU General Public License v2.0
      •78•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • phateR

      Public
      PHATE dimensionality reduction method implemented in R
      HTML
      •
      GNU General Public License v2.0
      •10•0•0•0•Updated Jan 27, 2021Jan 27, 2021

    • gene_features

      Public
      R
      •7•0•0•0•Updated Jan 14, 2021Jan 14, 2021

    • CRISPRiaDesign

      Public
      Jupyter Notebook
      •17•2•0•0•Updated May 12, 2020May 12, 2020

    • zappa_dash

      Public
      Implementing Plotly's Dash on AWS Lambda via Zappa
      Python
      •6•0•0•0•Updated Aug 12, 2019Aug 12, 2019

    • composer

      Public
      Visual and code editor for Common Workflow Language
      TypeScript
      •
      Apache License 2.0
      •72•0•0•0•Updated Oct 9, 2018Oct 9, 2018