Epistasis Lab at Cedars Sinai

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78 repositories

scikit-mdr
Public
A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
Python
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MIT License
•26•125•11•0•Updated Jun 10, 2025Jun 10, 2025
escargot
Public
Python
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MIT License
•4•25•2•0•Updated Jun 2, 2025Jun 2, 2025
SynTwin
Public
SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients
Jupyter Notebook
•1•1•0•0•Updated May 29, 2025May 29, 2025
StarBASE-GP
Public
Python
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GNU General Public License v3.0
•1•2•0•0•Updated May 28, 2025May 28, 2025
tpot
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
automation aiml model-selection hyperparameter-optimization gradient-boosting automated-machine-learning parameter-tuning alzheimer alzheimers nia
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•1.6k•9.9k•295•13•Updated May 15, 2025May 15, 2025
AddictionKB
Public
A knowledge base for AI research in addiction
aiml knowledge-graph addiction automl nlm aids substance-use-disorder
Python
•0•0•0•0•Updated Apr 2, 2025Apr 2, 2025
KRAGEN
Public
Software to implement GoT with a weviate vectorized database
Python
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MIT License
•43•669•18•0•Updated Mar 25, 2025Mar 25, 2025
pmlbr
Public
pmlb is an R interface to the Penn Machine Learning Benchmarks data repository
R
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Other
•2•9•0•0•Updated Mar 11, 2025Mar 11, 2025
pmlb
Public
PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
Python
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MIT License
•140•831•17•0•Updated Feb 25, 2025Feb 25, 2025
tpot2
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
data-science machine-learning automation random-forest scikit-learn aiml model-selection hyperparameter-optimization feature-engineering automl
Jupyter Notebook
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GNU Lesser General Public License v3.0
•31•235•52•2•Updated Feb 4, 2025Feb 4, 2025
PAGER
Public
PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.
encoding gwas genetics epistasis additive-models heterosis genetic-interactions dominance-analysis genotype-to-phenotype non-additive-effects
Python
•1•3•0•0•Updated Jan 3, 2025Jan 3, 2025
Aliro
Public
Aliro: AI-Driven Data Science
aiml alzheimers-disease automl alzheimer alzheimers nia adsp ag066833 u01ag066833
JavaScript
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GNU General Public License v3.0
•63•231•58•32•Updated Oct 7, 2024Oct 7, 2024
AlzKB
Public
aiml alzheimers-disease automl alzheimer alzheimers nia adsp ag066833 u01ag066833
Python
•2•17•0•0•Updated Sep 3, 2024Sep 3, 2024
latent_phenotype_project
Public
Python
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MIT License
•0•1•0•0•Updated Aug 9, 2024Aug 9, 2024
PSB25_ADSP_GIG
Public
0•0•0•0•Updated Aug 1, 2024Aug 1, 2024
AlzKB-updates
Public
Jupyter Notebook
•0•1•0•0•Updated Jul 23, 2024Jul 23, 2024
STAR_outliers
Public
Python
•
MIT License
•1•1•1•0•Updated May 18, 2024May 18, 2024
tpot2_imputetest
Public
Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•31•1•0•0•Updated May 1, 2024May 1, 2024
tpot2-feedstock
Public
A conda-smithy repository for tpot2.
BSD 3-Clause "New" or "Revised" License
•4•0•0•0•Updated Apr 24, 2024Apr 24, 2024
GPT4_and_Review
Public
Using GPT-4 to write a scientific review article: a pilot evaluation study
Python
•0•3•0•0•Updated Apr 10, 2024Apr 10, 2024
autoqtl
Public
Automated Quantitative Trait Locus Analysis (AutoQTL)
Python
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GNU General Public License v3.0
•3•9•0•0•Updated Mar 5, 2024Mar 5, 2024
epistasis_detection
Public
Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.
Jupyter Notebook
•1•2•0•0•Updated Feb 29, 2024Feb 29, 2024
EBIC.jl
Public
EBIC - a biclustering algorithm in Julia
Julia
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MIT License
•0•7•0•0•Updated Jan 24, 2024Jan 24, 2024
aliroed-pi-gen
Public
Tool used to create the AliroEd Raspberry Pi OS images
Shell
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BSD 3-Clause "New" or "Revised" License
•1.7k•0•0•0•Updated Jan 11, 2024Jan 11, 2024
PSB2024_spine
Public
Python
•0•0•0•0•Updated Sep 25, 2023Sep 25, 2023
tpot2_gptp_experiments
Public
Jupyter Notebook
•0•0•0•0•Updated Jul 31, 2023Jul 31, 2023
tpot2-test
Public
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•31•0•0•0•Updated May 31, 2023May 31, 2023
STAR_outliers_figure_and_table_generation
Public
Python
•0•0•0•0•Updated Apr 14, 2023Apr 14, 2023
exploration-trie-tpot
Public
Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature
HTML
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GNU General Public License v3.0
•1•0•0•0•Updated Mar 8, 2023Mar 8, 2023
scikit-rebate
Public
A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.
python data-science feature-selection
Python
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MIT License
•73•418•15•3•Updated Feb 10, 2023Feb 10, 2023