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    44 repositories

    • C-PAC

      Public
      Configurable Pipeline for the Analysis of Connectomes
      hacktoberfestclosember
      Python
      •
      GNU Lesser General Public License v3.0
      •42•68•428•19•Updated Jul 30, 2025Jul 30, 2025

    • cpac

      Public
      A convenience wrapper for https://github.com/FCP-INDI/C-PAC that provides a simple command line interface.
      hacktoberfestclosember
      Python
      •
      MIT License
      •3•4•11•3•Updated Jul 28, 2025Jul 28, 2025

    • CPAC_regtest_pack

      Public
      Python
      •6•0•3•1•Updated Jul 25, 2025Jul 25, 2025

    • regtest-runlogs

      Public
      Repository of logs from remote regression test runs
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • C-PAC_regression_dashboard

      Public
      Dashboard for C-PAC regression suite correlations
      Python
      •2•0•1•0•Updated Jul 21, 2025Jul 21, 2025

    • cpac-docs

      Public
      Updated SSOT/CI-based documentation for the Configurable Pipeline for the Analysis of Connectomes.
      JavaScript
      •2•1•49•0•Updated Jun 12, 2025Jun 12, 2025

    • C-PAC_tutorials

      Public
      Tutorials for C-PAC
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •0•1•2•1•Updated May 30, 2025May 30, 2025

    • cpac-qc

      Public
      Python
      •0•1•0•0•Updated May 21, 2025May 21, 2025

    • cpac_indices

      Public
      Sort C-PAC working directory subdirectories by index.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • C-PAC_GUI

      Public
      A new GUI for C-PAC
      hacktoberfestclosember
      JavaScript
      •
      Other
      •4•2•34•2•Updated May 2, 2025May 2, 2025

    • fcp-indi.github.io

      Public
      Github Pages Repo for FCP-INDI
      hacktoberfestclosemberdocumentation
      CSS
      •8•2•52•7•Updated Apr 24, 2025Apr 24, 2025

    • INDI-Tools

      Public
      Utilities developed for interaction with the AWS cloud
      Python
      •2•0•0•0•Updated Apr 22, 2025Apr 22, 2025

    • C-PAC_templates

      Public
      Templates and atlases that aren't included in Neuroparc and are packaged in C-PAC
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•18•0•Updated Apr 22, 2025Apr 22, 2025

    • nipype

      Public
      Workflows and interfaces for neuroimaging packages
      Python
      •
      Other
      •535•0•0•0•Updated Apr 15, 2025Apr 15, 2025

    • CPAC-Development

      Public
      Python
      •2•0•5•0•Updated Aug 22, 2024Aug 22, 2024

    • .github

      Public
      This repository houses default community health files for GitHub repositories for the 1000 Functional Connectomes Project, the International Neuroimaging Data-Sharing Initiative and the Computational Neuroimaging Lab at the Child Mind Institute.
      documentationclosembercommunity
      1•0•1•0•Updated Mar 27, 2024Mar 27, 2024

    • ciftify

      Public
      The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
      Python
      •
      MIT License
      •158•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • slurm_testing

      Public
      TEMPORARY FORK FOR TESTING
      Shell
      •2•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • reg-suite

      Public
      regression testing suite built for C-PAC
      Python
      •1•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • hpc_benchmark

      Public
      Your friendly neighborhood lightweight utility for monitoring resource usage of your pipelines and analyses.
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Apr 1, 2023Apr 1, 2023

    • app-C-PAC-brainlife.io

      Public
      This is the official C-PAC (Configurable Pipeline for the Analysis of Connectomes) brainlife.io app. Currently this app runs either the default pipeline or one of our preconfigured pipelines.
      pipelineanalysismrifmriconnectomicshacktoberfestclosember
      Shell
      •
      MIT License
      •2•0•7•0•Updated Feb 7, 2023Feb 7, 2023

    • TheWay

      Public
      Boilerplate scripts for running workflows on Penn clusters
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •11•0•1•0•Updated Jan 5, 2023Jan 5, 2023

    • awesoMRI-QC

      Public
      A curated list of measures, tools, and references for MRI quality control (QC).
      quality-controlawesome-listneuroimagingmri-analysis
      TeX
      •
      MIT License
      •1•1•0•0•Updated Oct 18, 2022Oct 18, 2022

    • cpac_run_logs

      Public
      Repository for information about C-PAC runs.
      1•1•13•0•Updated Sep 14, 2021Sep 14, 2021

    • theodore

      Public
      A C-PAC utility.
      Python
      •
      MIT License
      •1•0•8•0•Updated Jul 23, 2020Jul 23, 2020

    • cpac_outputs_to_bids

      Public
      Configurable script to convert CPAC outputs to BIDS format, greatly reduces the amount of storage needed for outputs, and works with BIDS APPS!
      Python
      •
      MIT License
      •1•1•0•0•Updated May 22, 2018May 22, 2018

    • rocklandsample

      Public
      Tools for interacting with Rockland Sample data in the AWS cloud.
      Python
      •0•0•2•1•Updated Mar 6, 2018Mar 6, 2018

    • fcp_indi_bucket_maintenance

      Public
      Scripts, how tos, FAQs, and issues related to maintaining the FCP-INDI public S3 bucket.
      MIT License
      •0•0•6•0•Updated Jan 18, 2018Jan 18, 2018

    • indi_bidsification

      Public
      Scripts related to the process of converting INDI datasets into BIDS format.
      Python
      •0•5•0•0•Updated May 18, 2017May 18, 2017

    • dki_preproc

      Public
      Python
      •1•0•0•0•Updated May 17, 2017May 17, 2017