Repositories list

• Apollo3

  Public
  JBrowse 2 plugin for editing annotations on an Apollo server

  TypeScript

  •

  Apache License 2.0

  •4•10•56•3•Updated Mar 11, 2025Mar 11, 2025

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  visualizationbioinformaticsgenomics+ 1jbrowse

  TypeScript

  •

  Apache License 2.0

  •65•229•327•23•Updated Mar 11, 2025Mar 11, 2025

• bam-js

  Public
  Parse BAM and BAM index files in javascript for node and the browser

  TypeScript

  •

  MIT License

  •9•22•9•1•Updated Mar 11, 2025Mar 11, 2025

• react-genomefeatures

  Public
  A React wrapper for the D3 genomefeatures library

  TypeScript

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• Apollo

  Public
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

  grailsgwtgroovy+ 4apollojbrowsegenome-annotation-editorjbrowse-plugin

  Groovy

  •

  Other

  •85•131•236•1•Updated Mar 5, 2025Mar 5, 2025

• trix-js

  Public
  Read UCSC Trix indexes in pure JavaScript

  TypeScript

  •

  Apache License 2.0

  •2•0•1•2•Updated Mar 3, 2025Mar 3, 2025

• jbrowse-react-linear-genome-view-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-linear-genome-view-vite-demo

  Public
  TypeScript

  •1•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-linear-genome-view-nextjs-demo

  Public
  TypeScript

  •1•1•1•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-linear-genome-view-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-linear-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•1•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-circular-genome-view-nextjs-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-circular-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-app-vite-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-app-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-app-nextjs-demo

  Public
  TypeScript

  •0•1•1•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-app-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse-react-app-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

• jbrowse

  Public
  JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

  bioinformaticsgenomicsbiology+ 3genome-annotationgenome-browserprotein-annotation

  JavaScript

  •

  Other

  •198•467•158•11•Updated Feb 27, 2025Feb 27, 2025

• tabix-js

  Public
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

  TypeScript

  •

  MIT License

  •5•14•2•0•Updated Feb 26, 2025Feb 26, 2025

• genomefeatures

  Public
  A D3 renderer for gene and variant features

  TypeScript

  •0•0•6•0•Updated Feb 23, 2025Feb 23, 2025

• indexedfasta-js

  Public
  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

  TypeScript

  •

  MIT License

  •4•12•0•1•Updated Feb 19, 2025Feb 19, 2025

• bgzf-filehandle

  Public
  Nodejs filehandle for reading bgzip+.gzi compressed files

  TypeScript

  •

  MIT License

  •4•7•5•2•Updated Feb 19, 2025Feb 19, 2025

• cram-js

  Public
  Read CRAM v3 and v2 in node or in the browser

  genomics

  TypeScript

  •

  MIT License

  •9•18•8•1•Updated Feb 14, 2025Feb 14, 2025

• vcf-js

  Public
  High performance Variant Call Format (VCF) parser in pure JavaScript

  TypeScript

  •

  MIT License

  •5•24•1•0•Updated Feb 13, 2025Feb 13, 2025

• jbrowse-plugin-development-tools

  Public
  TypeScript

  •0•1•0•0•Updated Feb 12, 2025Feb 12, 2025

• generic-filehandle2

  Public
  modernization of the original generic-filehandle, no Buffer polyfill needed

  TypeScript

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• jbrowse-plugin-template

  Public template
  Template to quickly start a new JBrowse 2 plugin

  TypeScript

  •

  Apache License 2.0

  •0•5•14•2•Updated Feb 4, 2025Feb 4, 2025

• react-msaview

  Public
  A multiple sequence alignment viewer

  TypeScript

  •

  MIT License

  •1•20•25•0•Updated Feb 3, 2025Feb 3, 2025

• abortable-promise-cache

  Public
  add AbortController support to a cache of async requests

  TypeScript

  •

  MIT License

  •2•6•1•5•Updated Jan 26, 2025Jan 26, 2025