Repositories list

• containers

  Public
  Dockerfile

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• scrnaseq-cellcomm-pipeline

  Public
  Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.

  Nextflow

  •

  MIT License

  •1•4•0•0•Updated May 6, 2025May 6, 2025

• scrnaseq-cellcomm

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• GaitiLabUtils

  Public
  Functions for R-projects

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

• gbm_manuscript

  Public
  Code for paper "Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration"

  gbmomics-analysis

  R

  •

  MIT License

  •1•2•0•0•Updated Mar 7, 2025Mar 7, 2025

• scRNAseq_pipeline

  Public
  R

  •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

• GBMutils

  Public
  Helper functions for GBM project

  R

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Nov 28, 2024Nov 28, 2024

• scRRBS_pipeline

  Public
  Python

  •0•1•0•0•Updated Jan 15, 2024Jan 15, 2024

• nf-processes

  Public
  modules for processing and analyzing single cell data using Nextflow

  single-cellnextflow-pipelinesbioinformatics

  Nextflow

  •1•2•0•0•Updated Mar 6, 2023Mar 6, 2023

• LineageTrees

  Public
  Python

  •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

• DMR_pipeline

  Public
  R

  •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

• ChromHMM

  Public
  Shell

  •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

• Cell_module_score

  Public
  R

  •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

• CNV_profiler

  Public
  R

  •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021