Repositories list

• stack-to-chunk

  Public
  Convert stacks of images to chunked datasets (and back)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•7•1•3•Updated Jul 15, 2025Jul 15, 2025

• rebin

  Public
  Re-bin stacks of JPEG2000 images to reduce their filesize and resolution

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•2•Updated Jul 14, 2025Jul 14, 2025

• hipct-reg

  Public
  Code to register HiP-CT volumes of interest to full organ datasets

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•4•Updated Jul 14, 2025Jul 14, 2025

• organ-masker

  Public
  Python

  •

  MIT License

  •3•1•4•1•Updated Jul 4, 2025Jul 4, 2025

• upsample-zarr

  Public
  Upsample Zarr arrays

  Python

  •0•1•2•1•Updated Jun 5, 2025Jun 5, 2025

• contrast-lims

  Public
  Script for calculating contrast limits for HiP-CT datasets

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•1•0•Updated Mar 26, 2025Mar 26, 2025

• Skeleton_analysis

  Public
  Perform skeletonisation fixes and then topological analysis

  MATLAB

  •0•0•3•0•Updated Jan 31, 2025Jan 31, 2025

• downsample-jp2s

  Public
  Script to create binned JPEG2000 datasets for HiP-CT data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

• Kaggle_skeleton_analyses

  Public
  This is a repository for the Kaggle skeleton analysis pipeline

  MATLAB

  •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• .github

  Public
  0•0•0•0•Updated May 21, 2024May 21, 2024

• data-speeds

  Public
  Comparing image file I/O

  Python

  •0•0•0•0•Updated Apr 6, 2024Apr 6, 2024

• Tomo_Recon

  Public archive
  MATLAB

  •

  GNU General Public License v3.0

  •0•8•0•0•Updated Jul 6, 2023Jul 6, 2023