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    93 repositories

    • laser-measles

      Public
      Measles model implementations based on LASER toolkit.
      Python
      •
      MIT License
      •1•2•24•0•Updated Jul 16, 2025Jul 16, 2025

    • emodpy-snt

      Public
      SNT Workflow for EMODPY
      R
      •
      MIT License
      •6•1•6•3•Updated Jul 16, 2025Jul 16, 2025

    • idmtools

      Public
      Python
      •
      Other
      •4•4•56•6•Updated Jul 15, 2025Jul 15, 2025

    • DHS-Indicators-R

      Public
      R code to produce Demographic and Health Survey Indicators
      R
      •86•0•1•1•Updated Jul 15, 2025Jul 15, 2025

    • laser-polio-nigeria

      Public
      Companion package for laser-polio with calibration scripts and data for Nigeria and environs
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 15, 2025Jul 15, 2025

    • laser-polio

      Public
      PHASER - Polio Huge Agent based Simulation for ERadication (using LASER)
      Python
      •
      MIT License
      •4•1•24•1•Updated Jul 15, 2025Jul 15, 2025

    • RasterToolkit

      Public
      Python scripts for working with shapefiles and rasterized population data
      Python
      •
      MIT License
      •1•1•12•1•Updated Jul 14, 2025Jul 14, 2025

    • MOSAIC-pkg

      Public
      The R package for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•1•0•Updated Jul 12, 2025Jul 12, 2025

    • laser-cholera

      Public
      "LASIK" - LASER based SImulation of Kolera
      Python
      •
      MIT License
      •1•2•9•0•Updated Jul 11, 2025Jul 11, 2025

    • clusteringForVarietyIdentification

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • GWSpatialGenetics

      Public
      The Institute of Disease Modeling interdisciplinary collaboration with Elizabeth Thiele (Vassar) and James Cotton (Wellcome Sanger Institute) to maximize the value of epidemiological and genetics data to understand Guinea worm transmission in Chad.
      HTML
      •4•3•0•0•Updated Jul 9, 2025Jul 9, 2025

    • dash-gene-drive

      Public
      Python
      •2•0•0•0•Updated Jul 9, 2025Jul 9, 2025

    • laser

      Public
      Light Agent Spatial modeling for ERadication
      Python
      •
      MIT License
      •8•4•56•3•Updated Jul 7, 2025Jul 7, 2025

    • covasim

      Public
      COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
      simulationmodelabmstochasticepidemiologyagent-basednpicoronaviruscovid-19covid
      Python
      •
      MIT License
      •227•269•18•6•Updated Jul 1, 2025Jul 1, 2025

    • laser-generic

      Public
      Generic, SI/SIR/SEIR/etc., disease models based on LASER core.
      Jupyter Notebook
      •
      MIT License
      •2•2•19•0•Updated Jun 20, 2025Jun 20, 2025

    • SmallAreaEstimationForSurveyIndicators

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • pathways-segmentation-public

      Public
      R
      •1•2•3•0•Updated Jun 18, 2025Jun 18, 2025

    • MOSAIC-docs

      Public
      Documentation for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      R
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • SAEDashboard

      Public
      JavaScript
      •
      MIT License
      •0•1•0•8•Updated May 12, 2025May 12, 2025

    • emodpy-typhoid

      Public
      Python API for EMOD-Typhoid model
      Python
      •
      Creative Commons Zero v1.0 Universal
      •3•1•8•0•Updated Apr 16, 2025Apr 16, 2025

    • MOSAIC-data

      Public
      A repository containing raw and processed data for the Metapopulation Outbreak Simulation with Agent-based Implementation for Cholera (MOSAIC).
      0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • Bridging-the-Gap-Low-Resource-African-Languages

      Public
      Code and data corresponding to paper Bridging the Gap: Enhancing LLM Performance for Low-Resource African Languages with New Benchmarks, Fine-Tuning, and Cultural Adjustments
      Jupyter Notebook
      •
      Other
      •1•7•0•2•Updated Mar 6, 2025Mar 6, 2025

    • data_access_library

      Public
      Data access library Demo Code and Contribution Guide
      HTML
      •
      MIT License
      •1•1•1•0•Updated Mar 5, 2025Mar 5, 2025

    • IDM-CMS

      Public
      IDM compartmental modeling software (CMS)
      simulationidmmsestochasticcms
      C#
      •
      Other
      •10•8•9•3•Updated Feb 19, 2025Feb 19, 2025

    • PACE-HRH-UI

      Public
      PACE-HRH-UI is a health capacity estimation tool built using R and Shinyapps
      R
      •
      MIT License
      •5•3•2•0•Updated Jan 13, 2025Jan 13, 2025

    • Deep-Learning-GIS-Regression

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • PACE-HRH

      Public
      PACE-HRH (Population-Aware Capacity Estimator for Human Resources for Health)
      R
      •
      MIT License
      •6•3•21•2•Updated Dec 17, 2024Dec 17, 2024

    • malaria-transmission_zero

      Public
      0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • AIAugmentedSurveyResponseCategorization

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • vis-tools

      Public
      Visualization Toolkit
      JavaScript
      •
      Other
      •11•17•2•3•Updated Oct 28, 2024Oct 28, 2024