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    • Semantic search for Janelia resources using GPT models
      Python
      BSD 3-Clause "New" or "Revised" License
      1320Updated Jul 10, 2025Jul 10, 2025
    • Browse, share, and publish data in the Janelia file system
      TypeScript
      BSD 3-Clause "New" or "Revised" License
      0105Updated Jul 9, 2025Jul 9, 2025
    • JavaScript
      BSD 3-Clause "New" or "Revised" License
      0101Updated Jul 9, 2025Jul 9, 2025
    • Utilities for Data and Information Services
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      11141Updated Jul 9, 2025Jul 9, 2025
    • Library of common utility functions for Python
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 9, 2025Jul 9, 2025
    • Linux scripts for transferring data from rig computers
      Shell
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jul 9, 2025Jul 9, 2025
    • Library of common DOI-related functions for Python
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 9, 2025Jul 9, 2025
    • Pipeline scripts and tools for reconstructing Electron Microscopy volumes.
      Python
      BSD 3-Clause "New" or "Revised" License
      3302Updated Jul 9, 2025Jul 9, 2025
    • Central metadata server for Fileglancer deployments
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 8, 2025Jul 8, 2025
    • easifish

      Public
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 8, 2025Jul 8, 2025
    • Small tool to annotate images
      Java
      0101Updated Jul 8, 2025Jul 8, 2025
    • Containers for workflow plugins
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 8, 2025Jul 8, 2025
    • Running compute-intense parts of BigStitcher distributed
      Java
      BSD 2-Clause "Simplified" License
      1326153Updated Jul 8, 2025Jul 8, 2025
    • Run BigStitcher-Spark using Nextflow
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jul 8, 2025Jul 8, 2025
    • Zstandard Compression for N5
      Java
      BSD 3-Clause "New" or "Revised" License
      1100Updated Jul 7, 2025Jul 7, 2025
    • Utilities for indexing and transferring of NeuronBridge-related files
      Python
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 7, 2025Jul 7, 2025
    • Distributed Color Depth MIP Search
      Java
      BSD 3-Clause "New" or "Revised" License
      1202Updated Jul 7, 2025Jul 7, 2025
    • Pydantic models for OME-NGFF
      Python
      BSD 3-Clause "New" or "Revised" License
      32461Updated Jul 7, 2025Jul 7, 2025
    • archive data to cold storage
      Shell
      BSD 3-Clause "New" or "Revised" License
      0000Updated Jul 7, 2025Jul 7, 2025
    • Nextflow modules for use with nf-core tooling
      Nextflow
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jul 3, 2025Jul 3, 2025
    • SSH cluster tunnel configuration for VS Code
      Python
      BSD 3-Clause "New" or "Revised" License
      0002Updated Jul 2, 2025Jul 2, 2025
    • tmt

      Public
      A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.
      MATLAB
      1200Updated Jul 2, 2025Jul 2, 2025
    • pocaduck

      Public
      PoCADuck is a library for efficiently storing and retrieving vast numbers of point clouds associated with segmentation labels.
      Python
      BSD 3-Clause "New" or "Revised" License
      0200Updated Jul 2, 2025Jul 2, 2025
    • HortaCloud - 3D annotation platform for large microscopy data
      JavaScript
      BSD 3-Clause "New" or "Revised" License
      110460Updated Jul 1, 2025Jul 1, 2025
    • Jupyterhub launcher configuration for the fileglancer application
      HTML
      BSD 3-Clause "New" or "Revised" License
      0001Updated Jul 1, 2025Jul 1, 2025
    • Julia
      MIT License
      13040Updated Jun 26, 2025Jun 26, 2025
    • Containerized Brain/VNC aligners for NeuronBridge
      ImageJ Macro
      BSD 3-Clause "New" or "Revised" License
      0100Updated Jun 25, 2025Jun 25, 2025
    • bigstream

      Public
      Tools for distributed alignment of massive images
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      2184133Updated Jun 25, 2025Jun 25, 2025
    • Dashboard interface for the JACSv2 services ecosystem.
      JavaScript
      MIT License
      0041Updated Jun 24, 2025Jun 24, 2025
    • A Matlab application for browsing and analysis of electrophysiology data.
      MATLAB
      2000Updated Jun 23, 2025Jun 23, 2025