Maastricht University IDS

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203 repositories

cohort-explorer
Public
🫀 Webapp to explore cohorts metadata for the iCARE4CVD project
cohort-analysis cohort-studies clean-room sensible-data
Python
•
MIT License
•4•5•0•1•Updated Aug 1, 2025Aug 1, 2025
food-claims-kg
Public
🧅 RDF knowledge graph for food health claims
api sparql rdf knowledge-graph grlc food-health-claim
Python
•
MIT License
•2•6•4•0•Updated Aug 1, 2025Aug 1, 2025
RDFCraft
Public
TypeScript
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MIT License
•4•11•10•7•Updated Jul 28, 2025Jul 28, 2025
CohortVarLinker
Public
semantic matching tool designed to align and harmonize variables across heterogeneous clinical cohort studies
Python
•
MIT License
•1•0•0•0•Updated Jul 24, 2025Jul 24, 2025
semanticscience
Public
The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.
owl science-fair ontology
HTML
•12•64•3•0•Updated Jul 23, 2025Jul 23, 2025
dsri-documentation
Public
📖 Documentation for the Data Science Research Infrastructure at Maastricht University
kubernetes documentation data-science openshift data-science-research dsri
TypeScript
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MIT License
•11•21•2•9•Updated Jul 18, 2025Jul 18, 2025
GenAI_hackathon_series
Public
This repository is for IDS generative AI (synthetic data generation) hackathon materials.
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jun 12, 2025Jun 12, 2025
DecentralizedHealthcareBackend
Public
Jupyter Notebook
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Other
•2•1•15•0•Updated Jun 3, 2025Jun 3, 2025
rstudio
Public
📈 RStudio with Shiny server Docker image
rstudio shiny-apps docker shiny
Dockerfile
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MIT License
•4•1•0•0•Updated Apr 15, 2025Apr 15, 2025
Drug-RAG
Public
Jupyter Notebook
•
MIT License
•0•1•0•0•Updated Mar 21, 2025Mar 21, 2025
trapi-predict-kit
Public
🧰 A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function.
openapi prediction-model translator-api trapi
Python
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MIT License
•2•1•4•0•Updated Mar 13, 2025Mar 13, 2025
knowledge-collaboratory
Public
🔬 Website to help browse and publish Nanopublications
rdf text-annotation nanopublications biolink-model
TypeScript
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MIT License
•6•9•5•0•Updated Mar 13, 2025Mar 13, 2025
UM_KEN4256_KnowledgeGraphs
Public
Resources for the KG course at IDS, Maastricht University
course knowledge-graph
Jupyter Notebook
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MIT License
•10•13•0•0•Updated Feb 25, 2025Feb 25, 2025
translator-openpredict
Public
🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API
openapi predict biomedical-concepts-associations translator-api trapi
Jupyter Notebook
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MIT License
•7•12•12•5•Updated Feb 25, 2025Feb 25, 2025
IDS-Training-Days-2025-Lib-Packaging
Public
Code for the the IDS Training Days 2025 on python Lib Packaging
Python
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MIT License
•1•1•0•0•Updated Feb 14, 2025Feb 14, 2025
KG_usage_metadata
Public
This repository contains code and datasets for a novel approach to analyzing SPARQL query logs, providing deeper insights into user interactions with knowledge graphs.
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Feb 10, 2025Feb 10, 2025
code-server
Public
🧑‍💻 VisualStudio Code server Docker image
docker visual-studio-code
Dockerfile
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MIT License
•3•6•0•0•Updated Feb 10, 2025Feb 10, 2025
PhD-training-materials
Public
This repository provides useful training materials for PhD students and junior researchers to strenghten their scientific skills.
MIT License
•0•0•0•0•Updated Dec 11, 2024Dec 11, 2024
jupyterlab
Public
🪐 JupyterLab + VisualStudio Code workspaces for data science and knowledge graphs
kubernetes openshift vscode jupyter-notebook visual-studio-code jupyterhub cloud-computing jupyterlab dsri jupyter
Dockerfile
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MIT License
•22•40•1•0•Updated Oct 16, 2024Oct 16, 2024
ubuntu
Public
🐧 Ubuntu Docker image
Dockerfile
•
MIT License
•2•0•0•0•Updated Oct 14, 2024Oct 14, 2024
clean-technologies-nlp
Public
🌱 A qualitative and computational study using NLP on H2020 projects in the context of climate change
nlp text-classification climate-change policy-analysis
Jupyter Notebook
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GNU General Public License v3.0
•1•5•0•0•Updated Sep 20, 2024Sep 20, 2024
RAG_LLM
Public
This repository is to collect state of the art models, code, publications related to RAG-LLM models. The resources can be related to prompt engineering, RAG methods, evaluation methods and benchmarks, and more.
MIT License
•1•0•0•0•Updated Sep 17, 2024Sep 17, 2024
d2s-core
Public
🥝 Core repository with Docker, CWL, Argo scripts for the d2s tool
Common Workflow Language
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MIT License
•1•4•2•1•Updated Sep 3, 2024Sep 3, 2024
d2s-project-template
Public template
📋 Template to build CWL workflows to convert data to a RDF Knowledge Graph and deploy services.
sparql knowledge-graph rdf cwl-workflows
Jupyter Notebook
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MIT License
•0•6•8•1•Updated Sep 3, 2024Sep 3, 2024
d2s-transform-biolink
Public
CWL workflows to build the NCATS Translator Red KG, complying with the BioLink model.
Jupyter Notebook
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MIT License
•0•0•0•1•Updated Sep 3, 2024Sep 3, 2024
docona
Public
DoConA (Document Content and Citation Analysis Pipeline) is an open source, configurable and extensible Python tool to analyse the level of agreement between the citation network of a set of textual documents and the textual similarity of these documents.
text-similarity word-embeddings citation-network citation-analysis
Python
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GNU Affero General Public License v3.0
•2•2•0•1•Updated Aug 20, 2024Aug 20, 2024
cookiecutter-trapi-predict-kit
Public
🍪🔮 A cookiecutter template to bootstrap machine learning prediction experiments, and integrate the predictions to a Translator Reasoner API
Python
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MIT License
•0•0•0•0•Updated Jul 25, 2024Jul 25, 2024
kg-metadata
Public
A SHACL metadata specification for knowledge graphs
metadata rdf shape knowledge-graph kg shacl
Jupyter Notebook
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MIT License
•1•0•0•1•Updated Jun 28, 2024Jun 28, 2024
FedQuery2024
Public
MIT License
•0•2•1•0•Updated Jun 27, 2024Jun 27, 2024
GNNDRKG
Public
Jupyter Notebook
•0•0•0•0•Updated Jun 18, 2024Jun 18, 2024