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@MetabolicAtlas Metabolic Atlas

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    12 repositories

    • standard-GEM-validation

      Public
      Validate standard-GEM repositories
      Python
      •
      GNU General Public License v3.0
      •0•3•7•0•Updated Jul 24, 2025Jul 24, 2025

    • MetabolicAtlas

      Public
      Open source genome-scale metabolic models of human and model animals
      metabolismmetabolic-modelsmetabolic-networkmetabolic-atlasnbiswedenatlas
      Vue
      •
      GNU General Public License v3.0
      •3•24•102•8•Updated Jul 23, 2025Jul 23, 2025

    • data-files

      Public
      Source data files used when deploying Metabolic Atlas
      Jupyter Notebook
      •0•0•2•0•Updated Jul 4, 2025Jul 4, 2025

    • data-generation

      Public
      Process the raw data-files for ingestion into the Neo4j database
      JavaScript
      •
      MIT License
      •0•0•2•0•Updated Oct 13, 2024Oct 13, 2024

    • biohackathon23

      Public
      biohackeu23
      JavaScript
      •
      Creative Commons Attribution 4.0 International
      •0•2•3•0•Updated Nov 17, 2023Nov 17, 2023

    • standard-GEM

      Public template
      The standard for open-source GEMs on GitHub
      Creative Commons Attribution 4.0 International
      •5•19•13•0•Updated Oct 26, 2023Oct 26, 2023

    • action-yamllint

      Public
      GitHub Action - Yaml Lint
      Shell
      •
      MIT License
      •45•0•0•0•Updated Oct 6, 2023Oct 6, 2023

    • 3d-network-viewer

      Public
      The 3D component of the Map Viewer for MetabolicAtlas.org
      JavaScript
      •
      GNU General Public License v3.0
      •3•3•0•1•Updated Jul 19, 2023Jul 19, 2023

    • memote-docker

      Public
      Use MEMOTE with Docker
      Dockerfile
      •
      Apache License 2.0
      •2•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • escher

      Public
      Build, share, and embed visualizations of metabolic pathways.
      JavaScript
      •
      Other
      •78•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • Human-GEM

      Public
      The generic genome-scale metabolic model of Homo sapiens
      MATLAB
      •
      Creative Commons Attribution 4.0 International
      •50•0•0•0•Updated Sep 13, 2021Sep 13, 2021

    • tree-of-GEMs

      Public
      Part of a Bachelor's Thesis project at Chalmers Biology and Biotechnology, aiming to describe model inheritance of GEMs. Link to the project description: http://www.chalmers.se/sv/institutioner/bio/utbildning/kandidatprojekt/Sidor/BBTX01-21-04.aspx
      MATLAB
      •0•2•0•0•Updated May 13, 2021May 13, 2021