NICALab

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14 repositories

SUPPORT
Public
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
deep-learning neural-network calcium-imaging microscopy structural-imaging denoising time-lapse-imaging self-supervised-learning voltage-imaging
Python
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GNU General Public License v3.0
•18•83•6•0•Updated Jun 27, 2025Jun 27, 2025
ExEM
Public
Source code for "Automated analysis of densely labeled expansion microscopy images using electron microscopy resources"
Python
•0•1•0•0•Updated Jun 17, 2025Jun 17, 2025
SEPARATE
Public
Spatial Expression PAttern-guided paiRing And unmixing of proTEins
Python
•0•1•0•0•Updated May 26, 2025May 26, 2025
GRAPHYCS
Public
Graph-based modeling of optical system enables adaptive optics with self-calibration over large field of view
Jupyter Notebook
•0•0•0•0•Updated May 23, 2025May 23, 2025
STABLE
Public
Preserving Spatial and Quantitative Information in Unpaired Biomedical Image-to-Image Translation
deep-learning unsupervised-learning calcium-imaging microscopy image-to-image-translation
Python
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GNU General Public License v3.0
•0•5•0•0•Updated May 14, 2025May 14, 2025
UBSN
Public
[WACV'25 Oral] (UBSN) Design Principles of Multi-Scale J-Invariant Networks for Self-Supervised Image Denoising
Python
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MIT License
•0•2•0•0•Updated Apr 3, 2025Apr 3, 2025
CN2-Simulator
Public
Computational Neuroscientists' Comprehensive Neuronal Simulator
simulation neuroscience electrophysiology calcium-imaging cell-assembly
Python
•0•1•0•0•Updated Dec 9, 2024Dec 9, 2024
PICASSO
Public
MATLAB
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GNU General Public License v3.0
•1•2•0•0•Updated Nov 22, 2023Nov 22, 2023
Zebrafish-brain-visualization
Public
Imaging whole-brain of larval zebrafish in vivo using three-dimensional fluorescence microscopy
MATLAB
•1•2•0•0•Updated May 23, 2023May 23, 2023
REALS
Public
Robust and Efficient Image Alignment through Simultaneous Low Rank and Sparse Decomposition
Python
•2•3•4•0•Updated Dec 14, 2022Dec 14, 2022
BEAR
Public
Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 2021.
neural-network pytorch calcium-imaging robust-pca nonnegative-matrix-factorization
Jupyter Notebook
•5•16•0•0•Updated Jun 16, 2022Jun 16, 2022
3DM
Public
Official code for "3DM: Deep decomposition and deconvolution microscopy for rapid neural activity imaging", Optics Express.
calcium-imaging microscopy neuroengineering deep-learning pytorch
Jupyter Notebook
•3•5•0•0•Updated Mar 12, 2022Mar 12, 2022
Inducing-Functions-through-RL
Public
Official code for "Inducing Functions through Reinforcement Learning without Task Specification", arXiv 2021.
Python
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MIT License
•0•1•0•0•Updated Nov 24, 2021Nov 24, 2021
rlpnet
Public
Official code for "RLP-Net: A Recursive Light Propagation Network for 3-D Virtual Refocusing", MICCAI 2021.
Python
•2•3•0•0•Updated Sep 24, 2021Sep 24, 2021