SMRUCC

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27 repositories

vcellkit
Public
GCModeller VirtualCell Simulator and Toolkit Module
gcmodeller microsoft-visualbasic virtualcell virtual-cell
Visual Basic .NET
•3•2•0•0•Updated Jan 1, 2026Jan 1, 2026
GCModeller
Public
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
bioinformatics genomics genome-annotation gcmodeller scibasic microsoft-visualbasic biological-data-analysis r-language single-cell virtualcell
Visual Basic .NET
•
GNU General Public License v3.0
•10•37•0•0•Updated Jan 1, 2026Jan 1, 2026
gcmodeller.org-website
Public
HOME page of http://gcmodeller.org website
CSS
•1•0•0•0•Updated Jan 1, 2026Jan 1, 2026
cell-farm
Public
The massively parallel virtual cell in-silicon farm to run cell population simulation
virtualcell
Visual Basic .NET
•
MIT License
•1•1•0•0•Updated Jan 1, 2026Jan 1, 2026
BlueprintCAD
Public
Virtual cell result viewer and debugger
svg gcmodeller microsoft-visualbasic kegg biocad
Visual Basic .NET
•1•1•0•0•Updated Jan 1, 2026Jan 1, 2026
Erica
Public
single-cell and spatial transcriptomics data analysis toolkit
HTML
•
MIT License
•0•1•0•0•Updated Dec 20, 2025Dec 20, 2025
kmer-cloud
Public
data visualization of the TSS upstream-region across multiple bacterial species
k-mer
R
•1•2•0•0•Updated Nov 21, 2025Nov 21, 2025
GCModeller-workbench
Public
GCModeller CAD workbench
TypeScript
•
GNU General Public License v3.0
•2•2•0•1•Updated Nov 19, 2025Nov 19, 2025
cell-render
Public
R# package of workflow script for create the virtual cell model from the genbank source
HTML
•
MIT License
•0•1•0•0•Updated Sep 3, 2025Sep 3, 2025
.github
Public
HTML
•
MIT License
•0•0•0•0•Updated Dec 14, 2024Dec 14, 2024
GCA_000005845.2_ASM584v2_genomic
Public
Escherichia coli str. K-12 substr. MG1655 virtual cell modelling
R
•
MIT License
•0•1•0•0•Updated May 21, 2023May 21, 2023
R.Bioinformatics
Public
R language bioinformatics analysis package wrapper for VisualBasic
bioinformatics r visualbasic microsoft-visualbasic rdotnet
Visual Basic .NET
•
GNU General Public License v3.0
•4•8•0•0•Updated Nov 20, 2021Nov 20, 2021
GCModeller.Cytoscape
Public
GCModeller biological network visualization tools based on the Cytoscape
visualization network cytoscape gcmodeller vb scibasic microsoft-visualbasic
Visual Basic .NET
•
GNU General Public License v3.0
•1•3•0•0•Updated Oct 23, 2020Oct 23, 2020
PLAS.NET
Public
Biosystem analysis tool based on SSystem
Visual Basic .NET
•
GNU General Public License v3.0
•1•2•0•0•Updated Oct 16, 2020Oct 16, 2020
Sequence-Patterns-Toolkit
Public
Sequence feature loci site analysis toolkit
Visual Basic .NET
•
GNU General Public License v3.0
•2•2•0•0•Updated Oct 10, 2020Oct 10, 2020
ncbi-localblast
Public
NCBI localblast toolkit for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•1•3•0•0•Updated Sep 29, 2020Sep 29, 2020
GCModeller.Circos
Public
Circos API for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•2•2•0•0•Updated Sep 29, 2020Sep 29, 2020
GO_gene-ontology
Public
Gene Ontology Parser for GCModeller
Visual Basic .NET
•
GNU General Public License v3.0
•1•1•0•0•Updated Sep 29, 2020Sep 29, 2020
Xanthomonas_campestris_8004_uid15
Public
[Xanthomonas campestris pv. campestris 8004] GCModeller genomics Modelling Project
genome network palindrome gcmodeller ncbi xanthomonas-campestris-8004-uid15 pathway
R
•
Creative Commons Attribution 4.0 International
•0•0•0•0•Updated Jul 27, 2020Jul 27, 2020
GCModeller.Core
Public
GCModeller Individual Components: GCModeller base core assembly library on common biological database read and write I/O
bioinformatics genbank gcmodeller scibasic uniprot ncbi kegg
Visual Basic .NET
•
GNU General Public License v3.0
•2•4•0•0•Updated Jul 26, 2020Jul 26, 2020
gcmodeller-developer
Public
JavaScript
•0•1•0•0•Updated Jun 9, 2020Jun 9, 2020
biom-format
Public
The Biological Observation Matrix (BIOM) Format Project
Python
•
Other
•93•1•0•0•Updated Nov 14, 2016Nov 14, 2016
RegPrecise
Public
RegPrecise Motif Database
MIT License
•3•2•0•0•Updated Sep 19, 2016Sep 19, 2016
genome-synteny
Public
GCModeller visualization tools
Visual Basic
•
GNU General Public License v3.0
•1•2•0•0•Updated Sep 3, 2016Sep 3, 2016
docs.gcmodeller.org
Public
Document library of GCModeller
GNU General Public License v3.0
•0•0•0•0•Updated Jul 27, 2016Jul 27, 2016
HMM
Public
Hidden-Markov-Model in VisualBasic
Visual Basic
•
MIT License
•3•1•0•0•Updated Apr 15, 2016Apr 15, 2016
seqpipe
Public
a SEQuencing data analysis PIPEline framework
Perl
•4•0•0•0•Updated Feb 9, 2016Feb 9, 2016