Repositories list

• RDM-guidelines

  Public
  This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

  HTML

  •

  Other

  •4•5•24•2•Updated Jul 12, 2025Jul 12, 2025

• data.scilifelab.se

  Public
  SciLifeLab Data Platform

  HTML

  •

  MIT License

  •5•2•0•3•Updated Jul 11, 2025Jul 11, 2025

• serve

  Public
  SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.

  Python

  •

  Apache License 2.0

  •1•10•1•2•Updated Jul 11, 2025Jul 11, 2025

• DIGIfor1Health_web

  Public
  Liquid

  •

  MIT License

  •1•0•2•1•Updated Jul 11, 2025Jul 11, 2025

• precision-medicine-portal-frontend

  Public
  React project for the frontend of the Precision Medicine Portal by DC Data Science Node

  TypeScript

  •

  Other

  •0•2•0•0•Updated Jul 11, 2025Jul 11, 2025

• pathogens-portal

  Public
  Swedish pathogens portal

  bootstrapmarkdownhugo+ 1covid-19

  HTML

  •

  MIT License

  •28•13•0•1•Updated Jul 11, 2025Jul 11, 2025

• serve-charts

  Public
  SciLifeLab Serve charts repository

  HTML

  •

  Other

  •1•1•0•1•Updated Jul 10, 2025Jul 10, 2025

• Anubis

  Public
  Proposal submission and review handling system.

  Python

  •

  MIT License

  •2•2•3•8•Updated Jul 10, 2025Jul 10, 2025

• genome-portal

  Public
  This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden

  Python

  •

  MIT License

  •0•0•0•3•Updated Jul 7, 2025Jul 7, 2025

• node-pathogens-portal

  Public
  This toolbox contains minimal code for a Pathogens Portal Node (PPN). You can view a demo site at the URL below

  MIT License

  •5•2•0•1•Updated Jul 4, 2025Jul 4, 2025

• SciLifeLab-Data-Repository-API-examples

  Public
  Collection of example scripts for interacting with the SciLifeLab Data Repository (https://scilifelab.figshare.com) using the API.

  Python

  •

  MIT License

  •2•0•0•0•Updated Jul 2, 2025Jul 2, 2025

• pathogens-portal-scripts

  Public
  This repository holds the scripts produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•1•0•1•Updated Jun 23, 2025Jun 23, 2025

• dds_cli

  Public
  The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

  clickpythoncommand-line

  Python

  •

  MIT License

  •11•9•5•5•Updated Jun 19, 2025Jun 19, 2025

• data-centre-template

  Public template
  Template repository for SciLifeLab Data Centre repositories

  MIT License

  •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• OrderPortal

  Public
  A portal for orders (requests, project applications, etc) to a facility from its users.

  Python

  •

  MIT License

  •13•7•6•7•Updated Jun 18, 2025Jun 18, 2025

• dashfold

  Public
  Port of colabfold to dash

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• dds_web

  Public
  A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

  pythonflask

  Python

  •

  Other

  •8•8•0•4•Updated Jun 17, 2025Jun 17, 2025

• open-science-checklists

  Public
  Checklists produced by the Open Science Team at SciLifeLab Sweden for guidance on compliance with FAIR principles.

  Creative Commons Zero v1.0 Universal

  •0•0•2•0•Updated Jun 16, 2025Jun 16, 2025

• serve-images

  Public
  All files related to images used in Serve

  Python

  •

  MIT License

  •1•1•2•0•Updated Jun 16, 2025Jun 16, 2025

• serve-load-testing

  Public
  Load testing for SciLifeLab Serve using the Python Locust library.

  Python

  •

  MIT License

  •0•1•0•0•Updated Jun 16, 2025Jun 16, 2025

• omero-workshops

  Public
  Workshop material related to SciLifeLab OMERO

  Jupyter Notebook

  •

  Other

  •0•1•0•0•Updated Jun 13, 2025Jun 13, 2025

• omero-oauth_labsyspharm

  Public
  OMERO.web application to allow OAuth2 login to OMERO

  Python

  •

  GNU Affero General Public License v3.0

  •4•1•0•1•Updated Jun 13, 2025Jun 13, 2025

• scilifelab-metadata-templates

  Public
  This repository stores metadata templates in use at SciLifeLab, organized according to data type.

  Python

  •

  MIT License

  •0•1•5•0•Updated Jun 11, 2025Jun 11, 2025

• dc-dynamic

  Public
  Scripts related to Freya applications and Slack

  Python

  •

  MIT License

  •1•2•0•0•Updated Jun 3, 2025Jun 3, 2025

• covid-sample-collection-database

  Public
  The Swedish COVID-19 Sample Collection Database, part of the Swedish Pathogens Portal

  HTML

  •

  MIT License

  •1•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• keywords-vos

  Public
  A simple website to show keywords occurence

  JavaScript

  •

  MIT License

  •0•0•0•1•Updated Jun 3, 2025Jun 3, 2025

• form-manager

  Public
  A simple system for receiving form submissions.

  pythonflaskmongodb+ 2vuequasar-framework

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•4•Updated Jun 3, 2025Jun 3, 2025

• blobserver

  Public
  Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.

  Python

  •

  MIT License

  •0•2•0•8•Updated Jun 3, 2025Jun 3, 2025

• pathogens-portal-visualisations

  Public
  This repository holds the visualisations produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•6•0•0•Updated May 26, 2025May 26, 2025

• Publications

  Public
  A web-based publications reference database system.

  Python

  •

  MIT License

  •4•10•10•8•Updated May 23, 2025May 23, 2025