Statistical learning for Biomedicine

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31 repositories

SNPmanifold
Public
Manifold learning for single-cell single-nucleotide genetic variations
single-cell manifold-learning genetic-variants variational-autoencoder
Jupyter Notebook
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Apache License 2.0
•0•3•0•0•Updated Jul 29, 2025Jul 29, 2025
TemporalVAE-release
Public
Release repo for TemporalVAE
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•1•0•Updated Jul 28, 2025Jul 28, 2025
FineST
Public
HTML
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Apache License 2.0
•1•4•0•0•Updated Jul 23, 2025Jul 23, 2025
HLab-pubmon
Public
Publication monitoring at Huang Lab
TeX
•10•3•0•0•Updated Jul 23, 2025Jul 23, 2025
statbiomed.github.io
Public
GitHub page of statistical learning for biomedicine
CSS
•0•0•0•0•Updated Jul 21, 2025Jul 21, 2025
SpatialDM
Public
Spatial direct messaging detected by bivariate Moran
spatial-transcriptomics spatial-correlation cell-cell-communication ligand-receptor-interaction
Jupyter Notebook
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Apache License 2.0
•6•27•14•1•Updated Jul 16, 2025Jul 16, 2025
TemporalVAE-reproducibility
Public
Python
•0•2•0•0•Updated Jul 13, 2025Jul 13, 2025
HKUbioinfoNet
Public
HKU Bioinformatics Seminars
0•2•0•0•Updated Jul 12, 2025Jul 12, 2025
clonaltrans
Public
Estimation of clone-specific dynamical transition rate
Jupyter Notebook
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MIT License
•0•4•0•0•Updated Jul 5, 2025Jul 5, 2025
Embryo2live
Public
Jupyter Notebook
•1•0•0•0•Updated Jul 1, 2025Jul 1, 2025
scTail
Public
Detection and quantify alternative polyA site
Jupyter Notebook
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Apache License 2.0
•0•2•1•0•Updated Jun 28, 2025Jun 28, 2025
LogisticGLM
Public
Implementation of logistic regression and basic neural network
0•0•0•0•Updated Jun 24, 2025Jun 24, 2025
gLM2X-Tower
Public
Assessing large-scale genomic language models in predicting personal gene expression: promises and limitations
Python
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MIT License
•0•3•0•0•Updated May 27, 2025May 27, 2025
sbms-server
Public
School of Biomedical Sciences (HKU) server wiki repository
Shell
•5•6•0•3•Updated May 18, 2025May 18, 2025
DNA-AI-hackathon
Public
DNA AI Hackathon
Jupyter Notebook
•0•1•0•0•Updated Apr 2, 2025Apr 2, 2025
stemVAE_endometrium
Public
Version: alph; Time: 231128; Owner: awa121
Python
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MIT License
•0•2•0•0•Updated Jan 19, 2025Jan 19, 2025
BMDS-book
Public
Biomedical Data Science book
case-studies r-programming biomedical-data-science
HTML
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Creative Commons Zero v1.0 Universal
•3•7•0•1•Updated Nov 27, 2024Nov 27, 2024
UniTVelo
Public
UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
velocity inference rna transcriptomics trajectory
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•9•26•2•0•Updated Nov 12, 2024Nov 12, 2024
CRAK-Velo
Public
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•1•4•0•0•Updated Sep 16, 2024Sep 16, 2024
HKSingleCell2022
Public
Workshop on single cell data science 2022
conference-website single-cell-data-science
0•0•0•0•Updated May 29, 2024May 29, 2024
CamoTSS
Public
Detection and couting alternative TSS in single cells
Jupyter Notebook
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Apache License 2.0
•4•15•7•0•Updated Apr 21, 2024Apr 21, 2024
BBMix
Public
Inference of Beta-binomial mixture model
Python
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Apache License 2.0
•1•3•1•0•Updated Oct 11, 2023Oct 11, 2023
NegabinGLM
Public
NegabinGLM: Negative-binomial regression model
Jupyter Notebook
•0•0•0•0•Updated Jul 18, 2023Jul 18, 2023
SpatialCV
Public
Spatial Co-Variable gene pair analysis
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 8, 2022Nov 8, 2022
BetabinGLM
Public
Beta-binomial regression model
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 2, 2022Nov 2, 2022
GLM-hackathon
Public
Hackathon on GLM implementation for summer internship
Jupyter Notebook
•0•0•0•0•Updated Jul 30, 2022Jul 30, 2022
HKU-single-cell-workshop
Public
Single-cell analysis workshop at HKU
3•6•0•0•Updated Jul 25, 2022Jul 25, 2022
scRNA-efficiency-prediction
Public
Prediction of RNA splicing kinetics in scRNA-seq data
Python
•0•2•0•0•Updated May 3, 2022May 3, 2022
mito-RNAediting
Public
1•0•0•0•Updated Apr 23, 2022Apr 23, 2022
SingleCell-Workshop-2021
Public
Module 4 for HKU Single-cell Workshop
tutorials single-cell-rna-seq trajectory-inference rna-velocity cellular-genetics
HTML
•14•12•0•1•Updated Jul 6, 2021Jul 6, 2021