Repositories list

• PhyloFisher

  Public
  PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.

  phylogenomicsbioinformatics

  Python

  •

  MIT License

  •16•32•4•2•Updated Jun 10, 2025Jun 10, 2025

• phylofisher-pages

  Public
  HTML

  •1•0•1•1•Updated Jun 6, 2025Jun 6, 2025

• time-lapse.tools

  Public
  Python

  •0•0•0•0•Updated Jun 1, 2024Jun 1, 2024

• rjones-scripts

  Public
  This repository contains utility scripts written by Robert E. Jones

  bioinformatics

  Python

  •0•0•0•0•Updated May 23, 2024May 23, 2024

• phylofisher-current-protocols

  Public
  Python

  •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• seqpull

  Public
  Snakemake pipeline for pulling, assembling, and trimming gene sequences from short-read or long-read nucleotide datasets.

  Python

  •0•0•0•0•Updated Jan 20, 2023Jan 20, 2023

• MAKER2-pipeline

  Public
  Python

  •0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• dist_est

  Public
  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 25, 2022Aug 25, 2022

• mammal

  Public
  C

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 21, 2022Jul 21, 2022

• gfmix

  Public
  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 21, 2022Jul 21, 2022

• prequal

  Public
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses

  C++

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Jun 1, 2022Jun 1, 2022

• phylofisher-manual

  Public
  TeX

  •0•1•0•0•Updated Mar 22, 2022Mar 22, 2022

• astral

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 14, 2021Jun 14, 2021