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    46 repositories

    • AnnotationManualCorrection

      Public
      Python
      •0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • TOUCAN

      Public
      Supervised learning for fungal BGC discovery
      Python
      •
      MIT License
      •0•6•2•12•Updated Nov 11, 2025Nov 11, 2025

    • MultiPatchFormer

      Public
      Official Implementation of the MultiPatchFormer: A multiscale model for multivariate time series forecasting
      Python
      •5•13•1•0•Updated Oct 22, 2025Oct 22, 2025

    • siWalk

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • Bi-iGRU

      Public
      A bi-directional cross-channel RNN model for time-series forecasting of dairy production
      Python
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • OLMS

      Public
      OptimalLocalMinSearch
      Python
      •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • backprojector

      Public
      MATLAB
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • fangio

      Public
      Adds movement indices to behavior experiment videos (matlab)
      MATLAB
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • matrid

      Public
      manual tracking and identification software (matlab)
      MATLAB
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • Caribou

      Public
      Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning
      machine-learningalignment-freebacterial-genomesclassification-modelsbacteria-classification
      Python
      •
      MIT License
      •0•3•0•0•Updated May 19, 2025May 19, 2025

    • ArcticFox

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • mytest

      Public
      0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • UL33

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • KmerSignificanceScore

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ontos

      Public
      Ruby
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • dairy_biomarkers

      Public
      Ensemble supervised learning approach to discover discriminative biomarkers that predict dairy cow welfare.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • Bioinfo-Workshops

      Public
      Bioinfo-Workshops hosts hands-on tutorials and exercises covering NGS analysis, R programming, Linux basics, and more in bioinformatics.
      HTML
      •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • synchronization-of-w-videos-

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • cow-detection-and-identification-model

      Public
      MIT License
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • Canadian-cropland-dataset-github

      Public
      This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.
      Python
      •
      MIT License
      •7•44•1•0•Updated Jul 17, 2023Jul 17, 2023

    • the-canadian-cropland-dataset-website

      Public
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2023Jul 14, 2023

    • methylc-seq

      Public
      0•0•0•0•Updated Jun 6, 2023Jun 6, 2023

    • KEVOLVE

      Public
      Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold
      Jupyter Notebook
      •
      MIT License
      •3•3•0•0•Updated Apr 18, 2023Apr 18, 2023

    • CASTOR_KRFE

      Public
      Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
      machine-learningsvmfeature-extractionalignment-freecastortaxonomic-classificationkmersrfevirus-classificationcastor-krfe
      Python
      •
      MIT License
      •4•10•0•0•Updated Feb 26, 2023Feb 26, 2023

    • welfare_ai_2.0

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • evoVGM

      Public
      Evolutionary-based Variational Generative Model using Multiple Sequence Alignments
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 9, 2022Sep 9, 2022

    • evoVGM_Exp

      Public
      Python
      •1•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • RL-bgc-components

      Public
      Reinforcement learning for improving components in fungal BGCs
      Python
      •
      MIT License
      •0•4•0•0•Updated May 3, 2022May 3, 2022

    • Nucleotide-sequence-metadata-downloader

      Public
      Python script to download metadata associated with nucleotide sequences. The script takes as input a sequence file in fasta format where the id corresponds to the accession number of each sequence. It gives as output a file in excel format containing the different metadata related to the sequences available from the genbank database.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • mirLibSpark

      Public
      microRNA validation using Spark framework
      sparkngsmirnangs-analysismicrornangs-pipelinemicrorna-target-predictionmicrorna-predictionplant-microrna
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Sep 28, 2021Sep 28, 2021