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    59 repositories

    • protein-feature-vectors

      Public
      Code to produce fixed-length feature vectors from protein sequences based on iFeatureOmega
      Python
      •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • dictionary-visualizer

      Public
      Stand-alone DD viewer for schema.json artifacts
      JavaScript
      •1•3•0•4•Updated Sep 30, 2025Sep 30, 2025

    • sLAM

      Public
      Code to create a GPT-2-style, decoder-only Small LAnguage Model
      Python
      •0•1•0•0•Updated Sep 16, 2025Sep 16, 2025

    • prql

      Public
      PRQL is a modern language for transforming data — a simple, powerful, pipelined SQL replacement
      Rust
      •
      Apache License 2.0
      •239•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • semantic-search-demo

      Public
      demo app of semantic search using embeddings vs keyword search
      HTML
      •0•0•0•0•Updated Apr 13, 2025Apr 13, 2025

    • drug-discovery-workflows-public-fork

      Public
      Python
      •
      MIT No Attribution
      •17•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • sphinx-documentation-demo

      Public
      Attempting to demo the capabilities of Sphinx documentation
      Python
      •1•0•0•0•Updated May 29, 2024May 29, 2024

    • ansible-playbook-perfsonar

      Public
      A master playbook for deploying perfSONAR infrastructure
      Shell
      •
      Apache License 2.0
      •8•0•0•0•Updated May 9, 2024May 9, 2024

    • storybook-addon-jsdoc-to-mdx

      Public
      Automatically generates MDX documentation from JSDoc comments for Storybook.
      TypeScript
      •
      MIT License
      •6•0•0•0•Updated Mar 6, 2024Mar 6, 2024

    • wf-transcriptomes

      Public
      Python
      •
      Other
      •42•0•0•0•Updated Jan 4, 2024Jan 4, 2024

    • etldev

      Public
      Python
      •1•0•1•0•Updated Sep 21, 2023Sep 21, 2023

    • DIYA

      Public
      Repository for DIYA code
      Perl
      •
      GNU General Public License v3.0
      •4•6•0•0•Updated Sep 7, 2023Sep 7, 2023

    • dictionaryutils

      Public
      Python
      •
      Apache License 2.0
      •3•4•0•0•Updated Aug 7, 2023Aug 7, 2023

    • bioit-sharing-ml-notebooks

      Public
      Sharing notebooks for Bio-IT World Demo
      HTML
      •0•1•0•0•Updated May 16, 2023May 16, 2023

    • saml

      Public archive
      SAML library for go
      Go
      •
      BSD 2-Clause "Simplified" License
      •473•0•0•5•Updated Apr 10, 2023Apr 10, 2023

    • vqtomics

      Public
      A Vue.js UI for querying variants from Omics.
      Vue
      •
      MIT License
      •0•0•0•0•Updated Feb 22, 2023Feb 22, 2023

    • covid-bioinformatics

      Public
      Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs
      bioinformaticsalignmentsbed-fileshmmscovcoronaviruscovid-19covidcovid19sars-cov-2
      Python
      •
      Apache License 2.0
      •2•4•0•0•Updated Feb 8, 2023Feb 8, 2023

    • ct-gov

      Public
      Python
      •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • service-workbench-on-aws

      Public
      A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
      JavaScript
      •
      Apache License 2.0
      •118•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • Bibliometrics

      Public
      Scripts to generate bibliometrics data and perform analysis
      Python
      •0•0•0•0•Updated Jul 13, 2022Jul 13, 2022

    • data-portal-2021.09

      Public
      JavaScript
      •
      Apache License 2.0
      •0•0•0•0•Updated May 12, 2022May 12, 2022

    • gen3-ui-component

      Public
      Base UI component in gen3
      JavaScript
      •
      Apache License 2.0
      •3•0•0•0•Updated May 11, 2022May 11, 2022

    • cdis-manifest

      Public
      CSS
      •0•0•0•1•Updated May 11, 2022May 11, 2022

    • guppy

      Public
      Server that support GraphQL queries on data from elasticsearch
      JavaScript
      •
      Apache License 2.0
      •13•0•0•0•Updated Apr 28, 2022Apr 28, 2022

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      JavaScript
      •
      Apache License 2.0
      •52•0•0•0•Updated Apr 6, 2022Apr 6, 2022

    • secrets-store-csi-driver

      Public
      Secrets Store CSI driver for Kubernetes secrets - Integrates secrets stores with Kubernetes via a CSI volume.
      Go
      •
      Apache License 2.0
      •318•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • github-lnl-demo-2

      Public
      Python
      •2•0•0•0•Updated Nov 4, 2021Nov 4, 2021

    • hh-suite

      Public
      Remote protein homology detection suite.
      C
      •
      GNU General Public License v3.0
      •146•0•0•0•Updated Oct 13, 2021Oct 13, 2021

    • ML-Image-Segmentation

      Public
      Retinal OCT Image Segmentation for NEI OSIO Projects
      HTML
      •0•0•1•0•Updated Aug 27, 2021Aug 27, 2021

    • quickstart-mongodb

      Public
      AWS Quick Start Team
      Shell
      •
      Apache License 2.0
      •112•0•0•0•Updated Aug 26, 2021Aug 26, 2021