The Carpentries Incubator

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222 repositories

carpentries-incubator.org
Public
HTML
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•7•6•1•0•Updated Nov 15, 2025Nov 15, 2025
better-research-software
Public
Building Better Research Software
beta english lesson fair research-software fair-software carpentries-incubator
Python
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Other
•19•16•37•1•Updated Nov 14, 2025Nov 14, 2025
git-novice-branch-pr
Public
Version Control with Git
git beta lesson carpentry-lesson novice software-carpentry novices helpwanted-list
Other
•20•7•11•0•Updated Nov 14, 2025Nov 14, 2025
reproducible-research-through-reusable-code-in-1-day
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Lesson material for Reproducible research through reusable code workshop
reproducible-research english lesson reproducibility pre-alpha carpentries-incubator
Other
•2•2•8•0•Updated Nov 14, 2025Nov 14, 2025
byte-sized-rse-code-review
Public
Byte-Sized RSE: Code Review
english code-review lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
reproducible-ml-workflows
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Reproducible Machine Learning Workflows for Scientists
machine english pixi lesson hardware-acceleration pre-alpha
Python
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Other
•2•5•12•0•Updated Nov 14, 2025Nov 14, 2025
byte-sized-rse-code-quality
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Byte-Sized RSE: Code Style, Quality & Linting
english code-style code-quality lesson alpha carpentries-incubator code-linting byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
byte-sized-rse-overview
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Overview of the Byte-Sized RSE series
english lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
scons-novice
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Automation and SCons
automation english stable lesson scons carpentries-incubator
Python
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Other
•1•0•0•0•Updated Nov 13, 2025Nov 13, 2025
byte-sized-rse-git-intermediate
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Byte-Sized RSE: Intermediate Git
git version-control english lesson alpha intermediate carpentries-incubator byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 13, 2025Nov 13, 2025
spatial-transcriptomics
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Spatial Transcriptomics
beta english lesson 10x-genomics spatial-transcriptomics carpentries-incubator
JavaScript
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•3•0•27•0•Updated Nov 12, 2025Nov 12, 2025
Natural-language-processing
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Fundamentals of natural language processing with Python
python nlp natural-language-processing english lesson pre-alpha carpentries-incubator
Jupyter Notebook
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•2•5•5•1•Updated Nov 12, 2025Nov 12, 2025
byte-sized-rse-ci
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Byte-Sized RSE: Continuous Integration
continuous-integration ci english lesson alpha github-actions github-actions-ci carpentries-incubator byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 11, 2025Nov 11, 2025
byte-sized-rse-testing
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Byte-Sized RSE: Unit Testing Code
python testing unit-testing english lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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•0•1•0•0•Updated Nov 11, 2025Nov 11, 2025
byte-sized-rse-vscode
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Byte-Sized RSE: Code Development & Debugging with IDEs
debugging ide vscode english lesson alpha carpentries-incubator byte-sized-rse
Dockerfile
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•0•0•0•0•Updated Nov 11, 2025Nov 11, 2025
RDBMS-with-NocoDB-in-the-humanities
Public
Relational Databases with NocoDB
english lesson digital-humanities pre-alpha humanities carpentries-incubator nocodb
R
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•3•1•0•0•Updated Nov 11, 2025Nov 11, 2025
qtl-mapping
Public
Quantitative Trait Mapping
statistics genetics beta english lesson genome-analysis
R
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Other
•1•0•5•0•Updated Nov 11, 2025Nov 11, 2025
targets-workshop
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Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•12•36•23•6•Updated Nov 11, 2025Nov 11, 2025
statistical-inference-for-biology
Public
Statistical Inference for Biology
r statistics biology english lesson alpha carpentries-incubator
R
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•6•3•5•0•Updated Nov 11, 2025Nov 11, 2025
statistical-experimental-design
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Statistical Experimental Design
statistics english lesson pre-alpha experimental-design carpentries-incubator
R
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•2•2•0•0•Updated Nov 11, 2025Nov 11, 2025
machine-learning-biomedical-science
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Machine Learning for Biomedical Science
machine-learning english lesson pre-alpha biomedical-data-science r-lang biomedicine carpentries-incubator
R
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•0•0•0•0•Updated Nov 11, 2025Nov 11, 2025
eqtl-mapping
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Expression Quantitative Trait Locus (eQTL) Mapping
beta gene-expression english lesson multiparental-populations carpentries-incubator genetic-mapping
JavaScript
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•0•0•7•0•Updated Nov 11, 2025Nov 11, 2025
high-dimensional-stats-r
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High-dimensional statistics with R
r statistics english lesson pre-alpha carpentries-incubator high-dimensional-statistics
R
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•19•11•2•2•Updated Nov 11, 2025Nov 11, 2025
meetings-rse
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How to Run a Meeting
english lesson meetings pre-alpha professional-skills carpentries-incubator meetings-enhancement
Other
•1•2•7•0•Updated Nov 11, 2025Nov 11, 2025
julia-novice
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A lesson exploring the Julia language
programming julia julia-language lesson alpha carpentries-incubator
Julia
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•24•17•13•1•Updated Nov 11, 2025Nov 11, 2025
SDC-BIDS-EEG-EEGLAB
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Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging lesson eeg-data bids pre-alpha
Other
•3•5•1•1•Updated Nov 11, 2025Nov 11, 2025
blogging-with-hugo-and-github-pages
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Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages
blog github-pages hugo beta hugo-site english lesson
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•1•3•0•0•Updated Nov 11, 2025Nov 11, 2025
python-intermediate-development
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"Intermediate Research Software Development Skills (Python)" Lesson Material
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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•75•58•66•6•Updated Nov 11, 2025Nov 11, 2025
machine-learning-neural-python
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Introduction to artificial neural nets with Python
python machine-learning deep-learning machine beta ml english classification image-classification lesson
Other
•11•7•7•0•Updated Nov 11, 2025Nov 11, 2025
good-practices-lesson
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Good practices in research software development (without Git)
english lesson pre-alpha research-software-engineering carpentries-incubator
Other
•1•2•24•1•Updated Nov 11, 2025Nov 11, 2025